Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_K19
(471 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664... 100 5e-22
07_01_0718 + 5484553-5484601,5484836-5484933,5485028-5485078,548... 91 3e-19
08_02_1544 + 27787089-27787172,27787448-27787612,27787741-277878... 28 3.3
03_02_1026 + 13313672-13313876,13341211-13342005,13363815-133638... 27 5.8
11_08_0011 + 27612206-27615110,27615211-27615538,27615989-276160... 27 7.6
03_02_1029 - 13488535-13493037 27 7.6
03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484 27 7.6
03_01_0417 - 3197956-3198438,3198550-3200001,3200116-3200277,320... 27 7.6
>03_02_0235 +
6644083-6644125,6645218-6645315,6645448-6645498,
6645573-6645686,6645771-6645971,6646047-6646148,
6647245-6647352,6647745-6647995,6648108-6648279,
6648341-6648397,6648555-6648710,6648807-6648857,
6649053-6649193,6649270-6649464,6649534-6649665,
6649768-6649941,6650396-6650635,6650761-6650955
Length = 826
Score = 100 bits (240), Expect = 5e-22
Identities = 46/111 (41%), Positives = 69/111 (62%), Gaps = 2/111 (1%)
Frame = +1
Query: 139 PVHVSIEEVYAEQLAKIPGIERLGPIFKTNQPIDLTEAETEYRVRLLKHVYAQHVVLQFE 318
P V + Y + L+ IP G +FK+++P++LTEAETEY + ++KH+Y+ HVVLQ+
Sbjct: 553 PAPVPAVDAYQKILSSIPEFSGFGRLFKSSEPVELTEAETEYAINVVKHIYSSHVVLQYN 612
Query: 319 CVNTLCDQILEQVHVRLEC--PPEYEVVSIIPWQKLLYDKPGSVFVVVEYP 465
C NT+ +Q+LE V V ++ E+ V P + L YD PG +FV E P
Sbjct: 613 CTNTIPEQLLENVTVYVDATDAEEFSEVCSKPLRSLPYDSPGQIFVAFEKP 663
>07_01_0718 +
5484553-5484601,5484836-5484933,5485028-5485078,
5485744-5485857,5485887-5485937,5485938-5486138,
5486240-5486341,5486879-5486986,5487053-5487286,
5488250-5488500,5488592-5488763,5489165-5489320,
5489405-5489455,5489499-5489591,5489814-5490014,
5490105-5490236,5490308-5490481,5490755-5490994,
5491213-5491407
Length = 890
Score = 91.5 bits (217), Expect = 3e-19
Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Frame = +1
Query: 151 SIEEVYAEQLAKIPGIERLGPIFKTNQPIDLTEAETEYRVRLLKHVYAQHVVLQFECVNT 330
+++ Y + L+ IP G +FK++ P++LTEAETEY V ++KH+Y HVVLQ+ C NT
Sbjct: 621 TVDASYEKLLSSIPEFAGFGKLFKSSAPVELTEAETEYSVNVVKHIYDGHVVLQYNCTNT 680
Query: 331 LCDQILEQVHVRLEC--PPEYEVVSIIPWQKLLYDKPGSVFVVVE 459
+ +Q+LE+V V ++ E+ V+ + L YD PG FV E
Sbjct: 681 IPEQLLEEVVVFVDASEADEFSEVATKSLRSLPYDSPGQTFVAFE 725
>08_02_1544 +
27787089-27787172,27787448-27787612,27787741-27787850,
27788360-27788513,27788643-27788937,27788996-27789798
Length = 536
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 238 DLTEA-ETEYRVRLLKHVYAQHVVLQFECVNTLCDQILEQVHVRLECPPEYEV 393
+LTE E EYRV ++KH Y ++T CD + + + PPE EV
Sbjct: 107 ELTEKMEDEYRVNIVKHQYEAQWNGANSRLST-CDANANRFILSSDSPPEIEV 158
>03_02_1026 +
13313672-13313876,13341211-13342005,13363815-13363855,
13363967-13364140
Length = 404
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 139 PVHVSIEEVYAEQLAKIPGIERLGPIFKTNQPIDLTEAETEYRVRL 276
P VS E++ L++IP + G +F P + E E+R+ L
Sbjct: 94 PTSVSSSELHQIGLSEIPIVREFGDVFPEELPGMPPKREIEFRIDL 139
>11_08_0011 +
27612206-27615110,27615211-27615538,27615989-27616059,
27616962-27617118,27617676-27617709
Length = 1164
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 380 RNMRWCRLYLGKNYFTTSREAYLW-LSSTHQ 469
RN+ W +Y+G NYFT S Y+ LS T Q
Sbjct: 443 RNLSW--IYIGMNYFTGSIPDYIGNLSGTLQ 471
>03_02_1029 - 13488535-13493037
Length = 1500
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 139 PVHVSIEEVYAEQLAKIPGIERLGPIFKTNQPIDLTEAETEYRVRL 276
P V E++ +L++IP + G +F P + E E+R+ L
Sbjct: 512 PTSVRSSELHQIELSEIPIVREFGDVFPEELPGMPPKREIEFRIDL 557
>03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484
Length = 663
Score = 27.1 bits (57), Expect = 7.6
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +1
Query: 127 EVRKPVHVSIEEVYAE-QLAKIPGIERLGPIFKTNQPIDLTEAETEYRVRLLKHVYAQHV 303
++R+ +HVS +EVY E + G + TN P T+A E V Y V
Sbjct: 123 QIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTN-PYSATKAGAEMLVMAYGRSYGLPV 181
Query: 304 V 306
+
Sbjct: 182 I 182
>03_01_0417 -
3197956-3198438,3198550-3200001,3200116-3200277,
3200351-3201133
Length = 959
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 104 VSLGSSSEGTDIILKGSLGAVAMWSRRAFSSNP 6
V +G +S T I S V +WS R FSSNP
Sbjct: 59 VLVGETSADTISIENTSSEPVNLWSVRIFSSNP 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,911,485
Number of Sequences: 37544
Number of extensions: 207778
Number of successful extensions: 544
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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