Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_K19
(471 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC110796-1|AAI10797.1| 726|Homo sapiens COPG2 protein protein. 123 3e-28
BC017443-1|AAH17443.2| 865|Homo sapiens COPG2 protein protein. 123 3e-28
AK022934-1|BAB14315.1| 799|Homo sapiens protein ( Homo sapiens ... 123 3e-28
AF207598-1|AAF19433.1| 871|Homo sapiens coat protein gamma2-COP... 123 3e-28
AF157833-1|AAF14271.1| 871|Homo sapiens nonclathrin coat protei... 123 3e-28
AB047847-1|BAB17658.1| 871|Homo sapiens gamma2-COP protein. 123 3e-28
AL162012-1|CAB82364.1| 133|Homo sapiens hypothetical protein pr... 117 2e-26
AK002086-1|BAA92078.1| 483|Homo sapiens protein ( Homo sapiens ... 114 1e-25
BC066650-1|AAH66650.1| 874|Homo sapiens coatomer protein comple... 111 2e-24
BC020498-1|AAH20498.2| 699|Homo sapiens COPG protein protein. 111 2e-24
AF100756-1|AAD43020.1| 874|Homo sapiens coat protein gamma-cop ... 111 2e-24
AB047846-1|BAB17657.1| 874|Homo sapiens gamma1-COP protein. 111 2e-24
>BC110796-1|AAI10797.1| 726|Homo sapiens COPG2 protein protein.
Length = 726
Score = 123 bits (297), Expect = 3e-28
Identities = 60/153 (39%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Frame = +1
Query: 13 LEKALRDHIATAPNDPFNIMSXXXXXXXXXXXXXXXXIEVRKPVHV--SIEEVYAEQLAK 186
+EKAL + PF++ S + KP + S ++++ EQLA
Sbjct: 558 MEKALHQYTLEPSEKPFDMKSIPLAMAPVFEQKAEITLVATKPEKLAPSRQDIFQEQLAA 617
Query: 187 IPGIERLGPIFKTNQPIDLTEAETEYRVRLLKHVYAQHVVLQFECVNTLCDQILEQVHVR 366
IP +GP+FK+++P+ LTEAETEY VR +KH++ H+V QF+C NTL DQ+LE+V V+
Sbjct: 618 IPEFLNIGPLFKSSEPVQLTEAETEYFVRCIKHMFTNHIVFQFDCTNTLNDQLLEKVTVQ 677
Query: 367 LECPPEYEVVSIIPWQKLLYDKPGSVFVVVEYP 465
+E YEV+S IP L Y++PG + +V P
Sbjct: 678 MEPSDSYEVLSCIPAPSLPYNQPGICYTLVRLP 710
>BC017443-1|AAH17443.2| 865|Homo sapiens COPG2 protein protein.
Length = 865
Score = 123 bits (297), Expect = 3e-28
Identities = 60/153 (39%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Frame = +1
Query: 13 LEKALRDHIATAPNDPFNIMSXXXXXXXXXXXXXXXXIEVRKPVHV--SIEEVYAEQLAK 186
+EKAL + PF++ S + KP + S ++++ EQLA
Sbjct: 552 MEKALHQYTLEPSEKPFDMKSIPLAMAPVFEQKAEITLVATKPEKLAPSRQDIFQEQLAA 611
Query: 187 IPGIERLGPIFKTNQPIDLTEAETEYRVRLLKHVYAQHVVLQFECVNTLCDQILEQVHVR 366
IP +GP+FK+++P+ LTEAETEY VR +KH++ H+V QF+C NTL DQ+LE+V V+
Sbjct: 612 IPEFLNIGPLFKSSEPVQLTEAETEYFVRCIKHMFTNHIVFQFDCTNTLNDQLLEKVTVQ 671
Query: 367 LECPPEYEVVSIIPWQKLLYDKPGSVFVVVEYP 465
+E YEV+S IP L Y++PG + +V P
Sbjct: 672 MEPSDSYEVLSCIPAPSLPYNQPGICYTLVRLP 704
>AK022934-1|BAB14315.1| 799|Homo sapiens protein ( Homo sapiens
cDNA FLJ12872 fis, clone NT2RP2003760, highly similar to
COATOMER GAMMA SUBUNIT. ).
Length = 799
Score = 123 bits (297), Expect = 3e-28
Identities = 60/153 (39%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Frame = +1
Query: 13 LEKALRDHIATAPNDPFNIMSXXXXXXXXXXXXXXXXIEVRKPVHV--SIEEVYAEQLAK 186
+EKAL + PF++ S + KP + S ++++ EQLA
Sbjct: 486 MEKALHQYTLEPSEKPFDMKSIPLAMAPVFEQKAEITLVATKPEKLAPSRQDIFQEQLAA 545
Query: 187 IPGIERLGPIFKTNQPIDLTEAETEYRVRLLKHVYAQHVVLQFECVNTLCDQILEQVHVR 366
IP +GP+FK+++P+ LTEAETEY VR +KH++ H+V QF+C NTL DQ+LE+V V+
Sbjct: 546 IPEFLNIGPLFKSSEPVQLTEAETEYFVRCIKHMFTNHIVFQFDCTNTLNDQLLEKVTVQ 605
Query: 367 LECPPEYEVVSIIPWQKLLYDKPGSVFVVVEYP 465
+E YEV+S IP L Y++PG + +V P
Sbjct: 606 MEPSDSYEVLSCIPAPSLPYNQPGICYTLVRLP 638
>AF207598-1|AAF19433.1| 871|Homo sapiens coat protein gamma2-COP
protein.
Length = 871
Score = 123 bits (297), Expect = 3e-28
Identities = 60/153 (39%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Frame = +1
Query: 13 LEKALRDHIATAPNDPFNIMSXXXXXXXXXXXXXXXXIEVRKPVHV--SIEEVYAEQLAK 186
+EKAL + PF++ S + KP + S ++++ EQLA
Sbjct: 558 MEKALHQYTLEPSEKPFDMKSIPLAMAPVFEQKAEITLVATKPEKLAPSRQDIFQEQLAA 617
Query: 187 IPGIERLGPIFKTNQPIDLTEAETEYRVRLLKHVYAQHVVLQFECVNTLCDQILEQVHVR 366
IP +GP+FK+++P+ LTEAETEY VR +KH++ H+V QF+C NTL DQ+LE+V V+
Sbjct: 618 IPEFLNIGPLFKSSEPVQLTEAETEYFVRCIKHMFTNHIVFQFDCTNTLNDQLLEKVTVQ 677
Query: 367 LECPPEYEVVSIIPWQKLLYDKPGSVFVVVEYP 465
+E YEV+S IP L Y++PG + +V P
Sbjct: 678 MEPSDSYEVLSCIPAPSLPYNQPGICYTLVRLP 710
>AF157833-1|AAF14271.1| 871|Homo sapiens nonclathrin coat protein
gamma2-COP protein.
Length = 871
Score = 123 bits (297), Expect = 3e-28
Identities = 60/153 (39%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Frame = +1
Query: 13 LEKALRDHIATAPNDPFNIMSXXXXXXXXXXXXXXXXIEVRKPVHV--SIEEVYAEQLAK 186
+EKAL + PF++ S + KP + S ++++ EQLA
Sbjct: 558 MEKALHQYTLEPSEKPFDMKSIPLAMAPVFEQKAEITLVATKPEKLAPSRQDIFQEQLAA 617
Query: 187 IPGIERLGPIFKTNQPIDLTEAETEYRVRLLKHVYAQHVVLQFECVNTLCDQILEQVHVR 366
IP +GP+FK+++P+ LTEAETEY VR +KH++ H+V QF+C NTL DQ+LE+V V+
Sbjct: 618 IPEFLNIGPLFKSSEPVQLTEAETEYFVRCIKHMFTNHIVFQFDCTNTLNDQLLEKVTVQ 677
Query: 367 LECPPEYEVVSIIPWQKLLYDKPGSVFVVVEYP 465
+E YEV+S IP L Y++PG + +V P
Sbjct: 678 MEPSDSYEVLSCIPAPSLPYNQPGICYTLVRLP 710
>AB047847-1|BAB17658.1| 871|Homo sapiens gamma2-COP protein.
Length = 871
Score = 123 bits (297), Expect = 3e-28
Identities = 60/153 (39%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Frame = +1
Query: 13 LEKALRDHIATAPNDPFNIMSXXXXXXXXXXXXXXXXIEVRKPVHV--SIEEVYAEQLAK 186
+EKAL + PF++ S + KP + S ++++ EQLA
Sbjct: 558 MEKALHQYTLEPSEKPFDMKSIPLAMAPVFEQKAEITLVATKPEKLAPSRQDIFQEQLAA 617
Query: 187 IPGIERLGPIFKTNQPIDLTEAETEYRVRLLKHVYAQHVVLQFECVNTLCDQILEQVHVR 366
IP +GP+FK+++P+ LTEAETEY VR +KH++ H+V QF+C NTL DQ+LE+V V+
Sbjct: 618 IPEFLNIGPLFKSSEPVQLTEAETEYFVRCIKHMFTNHIVFQFDCTNTLNDQLLEKVTVQ 677
Query: 367 LECPPEYEVVSIIPWQKLLYDKPGSVFVVVEYP 465
+E YEV+S IP L Y++PG + +V P
Sbjct: 678 MEPSDSYEVLSCIPAPSLPYNQPGICYTLVRLP 710
>AL162012-1|CAB82364.1| 133|Homo sapiens hypothetical protein
protein.
Length = 133
Score = 117 bits (281), Expect = 2e-26
Identities = 51/105 (48%), Positives = 75/105 (71%)
Frame = +1
Query: 151 SIEEVYAEQLAKIPGIERLGPIFKTNQPIDLTEAETEYRVRLLKHVYAQHVVLQFECVNT 330
S ++++ EQLA IP +GP+FK+++P+ LTEAETEY VR +KH++ H+V QF+C NT
Sbjct: 13 SRQDIFQEQLAAIPEFLNIGPLFKSSEPVQLTEAETEYFVRCIKHMFTNHIVFQFDCTNT 72
Query: 331 LCDQILEQVHVRLECPPEYEVVSIIPWQKLLYDKPGSVFVVVEYP 465
L DQ+LE+V V++E YEV+S IP L Y++PG + +V P
Sbjct: 73 LNDQLLEKVTVQMEPSDSYEVLSCIPAPSLPYNQPGICYTLVRLP 117
>AK002086-1|BAA92078.1| 483|Homo sapiens protein ( Homo sapiens
cDNA FLJ11224 fis, clone PLACE1008273, moderately
similar to COATOMER GAMMA SUBUNIT. ).
Length = 483
Score = 114 bits (275), Expect = 1e-25
Identities = 55/134 (41%), Positives = 81/134 (60%), Gaps = 2/134 (1%)
Frame = +1
Query: 13 LEKALRDHIATAPNDPFNIMSXXXXXXXXXXXXXXXXIEVRKPVHV--SIEEVYAEQLAK 186
+EKAL + PF++ S + KP + S ++++ EQLA
Sbjct: 345 MEKALHQYTLEPSEKPFDMKSIPLAMAPVFEQKAEITLVATKPEKLAPSRQDIFQEQLAA 404
Query: 187 IPGIERLGPIFKTNQPIDLTEAETEYRVRLLKHVYAQHVVLQFECVNTLCDQILEQVHVR 366
IPG +GP+FK+++P+ LTEAETEY VR +KH++ H+V QF+C NTL DQ+LE+V V+
Sbjct: 405 IPGFLNIGPLFKSSEPVQLTEAETEYFVRCIKHMFTNHIVFQFDCTNTLNDQLLEKVTVQ 464
Query: 367 LECPPEYEVVSIIP 408
+E YEV+S IP
Sbjct: 465 MEPSDSYEVLSCIP 478
>BC066650-1|AAH66650.1| 874|Homo sapiens coatomer protein complex,
subunit gamma protein.
Length = 874
Score = 111 bits (266), Expect = 2e-24
Identities = 57/156 (36%), Positives = 89/156 (57%), Gaps = 5/156 (3%)
Frame = +1
Query: 13 LEKALRDHIATAPNDPFNIMSXXXXXXXXXXXXXXXX--IEVRKPVHVSI--EEVYAEQL 180
LE+AL+ + PF++ S V++P V+ +E++ EQL
Sbjct: 558 LERALQQYTLEPSEKPFDLKSVPLATAPMAEQRTESTPITAVKQPEKVAATRQEIFQEQL 617
Query: 181 AKIPGIERLGPIFKTN-QPIDLTEAETEYRVRLLKHVYAQHVVLQFECVNTLCDQILEQV 357
A +P LGP+FK++ +P+ LTE+ETEY +R KH + H+V QF+C NTL DQ LE V
Sbjct: 618 AAVPEFRGLGPLFKSSPEPVALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENV 677
Query: 358 HVRLECPPEYEVVSIIPWQKLLYDKPGSVFVVVEYP 465
V++E YEV+ +P + L Y++PG+ + +V P
Sbjct: 678 TVQMEPTEAYEVLCYVPARSLPYNQPGTCYTLVALP 713
>BC020498-1|AAH20498.2| 699|Homo sapiens COPG protein protein.
Length = 699
Score = 111 bits (266), Expect = 2e-24
Identities = 57/156 (36%), Positives = 89/156 (57%), Gaps = 5/156 (3%)
Frame = +1
Query: 13 LEKALRDHIATAPNDPFNIMSXXXXXXXXXXXXXXXX--IEVRKPVHVSI--EEVYAEQL 180
LE+AL+ + PF++ S V++P V+ +E++ EQL
Sbjct: 383 LERALQQYTLEPSEKPFDLKSVPLATAPMAEQRTESTPITAVKQPEKVAATRQEIFQEQL 442
Query: 181 AKIPGIERLGPIFKTN-QPIDLTEAETEYRVRLLKHVYAQHVVLQFECVNTLCDQILEQV 357
A +P LGP+FK++ +P+ LTE+ETEY +R KH + H+V QF+C NTL DQ LE V
Sbjct: 443 AAVPEFRGLGPLFKSSPEPVALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENV 502
Query: 358 HVRLECPPEYEVVSIIPWQKLLYDKPGSVFVVVEYP 465
V++E YEV+ +P + L Y++PG+ + +V P
Sbjct: 503 TVQMEPTEAYEVLCYVPARSLPYNQPGTCYTLVALP 538
>AF100756-1|AAD43020.1| 874|Homo sapiens coat protein gamma-cop
protein.
Length = 874
Score = 111 bits (266), Expect = 2e-24
Identities = 57/156 (36%), Positives = 89/156 (57%), Gaps = 5/156 (3%)
Frame = +1
Query: 13 LEKALRDHIATAPNDPFNIMSXXXXXXXXXXXXXXXX--IEVRKPVHVSI--EEVYAEQL 180
LE+AL+ + PF++ S V++P V+ +E++ EQL
Sbjct: 558 LERALQQYTLEPSEKPFDLKSVPLATAPMAEQRTESTPITAVKQPEKVAATRQEIFQEQL 617
Query: 181 AKIPGIERLGPIFKTN-QPIDLTEAETEYRVRLLKHVYAQHVVLQFECVNTLCDQILEQV 357
A +P LGP+FK++ +P+ LTE+ETEY +R KH + H+V QF+C NTL DQ LE V
Sbjct: 618 AAVPEFRGLGPLFKSSPEPVALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENV 677
Query: 358 HVRLECPPEYEVVSIIPWQKLLYDKPGSVFVVVEYP 465
V++E YEV+ +P + L Y++PG+ + +V P
Sbjct: 678 TVQMEPTEAYEVLCYVPARSLPYNQPGTCYTLVALP 713
>AB047846-1|BAB17657.1| 874|Homo sapiens gamma1-COP protein.
Length = 874
Score = 111 bits (266), Expect = 2e-24
Identities = 57/156 (36%), Positives = 89/156 (57%), Gaps = 5/156 (3%)
Frame = +1
Query: 13 LEKALRDHIATAPNDPFNIMSXXXXXXXXXXXXXXXX--IEVRKPVHVSI--EEVYAEQL 180
LE+AL+ + PF++ S V++P V+ +E++ EQL
Sbjct: 558 LERALQQYTLEPSEKPFDLKSVPLATAPMAEQRTESTPITAVKQPEKVAATRQEIFQEQL 617
Query: 181 AKIPGIERLGPIFKTN-QPIDLTEAETEYRVRLLKHVYAQHVVLQFECVNTLCDQILEQV 357
A +P LGP+FK++ +P+ LTE+ETEY +R KH + H+V QF+C NTL DQ LE V
Sbjct: 618 AAVPEFRGLGPLFKSSPEPVALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENV 677
Query: 358 HVRLECPPEYEVVSIIPWQKLLYDKPGSVFVVVEYP 465
V++E YEV+ +P + L Y++PG+ + +V P
Sbjct: 678 TVQMEPTEAYEVLCYVPARSLPYNQPGTCYTLVALP 713
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,028,747
Number of Sequences: 237096
Number of extensions: 1114865
Number of successful extensions: 2521
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2517
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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