Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K19
         (471 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68880-8|CAJ43445.1|  883|Caenorhabditis elegans Hypothetical pr...    93   7e-20
Z68880-7|CAA93095.1|  870|Caenorhabditis elegans Hypothetical pr...    93   7e-20
Z72502-2|CAA96588.1|  423|Caenorhabditis elegans Hypothetical pr...    30   0.73 
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    29   1.7  
Z81041-6|CAB02788.1|  336|Caenorhabditis elegans Hypothetical pr...    27   6.8  

>Z68880-8|CAJ43445.1|  883|Caenorhabditis elegans Hypothetical
           protein T14G10.5b protein.
          Length = 883

 Score = 93.5 bits (222), Expect = 7e-20
 Identities = 51/116 (43%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
 Frame = +1

Query: 127 EVRKPVHVSIEEVYAEQLAKIPGIERLGPIFKTNQPIDLTEAETEYRVRLLKHVYAQHVV 306
           E  KP    +E  YA QLA IP    LGP+FK++  I LTE+  EY V ++KH +A  +V
Sbjct: 608 EEEKPKAPKVEP-YAAQLAAIPQFAALGPVFKSSTRIALTESIAEYTVHMIKHTFANAMV 666

Query: 307 LQFECVNTLCDQILEQVHVRLECPP-EYEVVSIIPWQKLLYDKPGSVFVVVEYPSA 471
           LQFEC NT+ DQ+L  V V LE P  E+E  + +   KL Y +  S F ++E+P +
Sbjct: 667 LQFECKNTMNDQLLLDVSVELEDPDGEWETGNTVQIDKLPYGEVHSAFSLLEFPDS 722


>Z68880-7|CAA93095.1|  870|Caenorhabditis elegans Hypothetical
           protein T14G10.5a protein.
          Length = 870

 Score = 93.5 bits (222), Expect = 7e-20
 Identities = 51/116 (43%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
 Frame = +1

Query: 127 EVRKPVHVSIEEVYAEQLAKIPGIERLGPIFKTNQPIDLTEAETEYRVRLLKHVYAQHVV 306
           E  KP    +E  YA QLA IP    LGP+FK++  I LTE+  EY V ++KH +A  +V
Sbjct: 595 EEEKPKAPKVEP-YAAQLAAIPQFAALGPVFKSSTRIALTESIAEYTVHMIKHTFANAMV 653

Query: 307 LQFECVNTLCDQILEQVHVRLECPP-EYEVVSIIPWQKLLYDKPGSVFVVVEYPSA 471
           LQFEC NT+ DQ+L  V V LE P  E+E  + +   KL Y +  S F ++E+P +
Sbjct: 654 LQFECKNTMNDQLLLDVSVELEDPDGEWETGNTVQIDKLPYGEVHSAFSLLEFPDS 709


>Z72502-2|CAA96588.1|  423|Caenorhabditis elegans Hypothetical
           protein C08B6.5 protein.
          Length = 423

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = +1

Query: 160 EVYAEQLAKI-PGIER--LGPIFKTN-QPIDLTEAETEYRVRLLKHVYAQHVVLQFECVN 327
           +++ + L KI PGI    LGP + T  QP D+T    + R+ L KH+     +    C  
Sbjct: 320 QMFNKALLKILPGIASITLGPGYGTKKQPEDITVQVKKTRLSLKKHLEQLFYIYLIGCGI 379

Query: 328 TLCDQILEQVHVRLECPPEYEVVSI 402
            L   I+E+V  R+      +V  +
Sbjct: 380 ALAFFIIEKVFFRMRVLKRQKVYQV 404


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
            protein H43E16.1 protein.
          Length = 1203

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 2/129 (1%)
 Frame = -2

Query: 458  STTTN--TLPGLS*SNFCQGIIDTTSYSGGHSNLTCTCSNI*SQSVFTHSNXXXXXXXXX 285
            ST TN       S S+  Q I  +T+  G  ++ T   +   S S  T+ N         
Sbjct: 859  STVTNPPVSSSTSGSSSTQPIASSTANPGSSTSGTTVVTTQGSSSTQTNPNTGSTGSTVT 918

Query: 284  CFNKRTRYSVSASVRSIG*FVLKMGPNLSIPGILASCSAYTSSIETCTGLRTSISTIDSL 105
              +  +  S S+S + I        P  S  G   + +  +SS  T T   T  +T+ + 
Sbjct: 919  QPSAFSSTSASSSTQPIA-SSTTANPGSSTSGPTIASTQGSSS--TQTNSNTGSTTVATT 975

Query: 104  VSLGSSSEG 78
            V+ GSS+EG
Sbjct: 976  VTQGSSTEG 984


>Z81041-6|CAB02788.1|  336|Caenorhabditis elegans Hypothetical
           protein C27A7.7 protein.
          Length = 336

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 182 ASCSAYTSSIETCTGL-RTSISTIDSLVSLGSSSEG 78
           A+  AY   +  C GL   + ST+D LV++GS SEG
Sbjct: 36  ANIGAYKYML-VCFGLFDITYSTVDMLVAMGSHSEG 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,309,083
Number of Sequences: 27780
Number of extensions: 188591
Number of successful extensions: 516
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)