Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K19
         (471 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   6.7  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   6.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.7  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   6.7  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   8.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = -2

Query: 221 LKMGPNLSIPGILASCSAYTSSIETCTGLRTSISTIDSLVSLGSSSEGTDI 69
           L  G  +S+ GI+   +AY    +T  G+         L+S G +   T +
Sbjct: 175 LYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTV 225


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = -2

Query: 221 LKMGPNLSIPGILASCSAYTSSIETCTGLRTSISTIDSLVSLGSSSEGTDI 69
           L  G  +S+ GI+   +AY    +T  G+         L+S G +   T +
Sbjct: 175 LYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTV 225


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 332 FAIKYWNKCM*DWNVLRNMRWCRL 403
           +  KY N C  D  + R  + CRL
Sbjct: 221 YQCKYGNNCEIDMYMRRKCQECRL 244


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 332 FAIKYWNKCM*DWNVLRNMRWCRL 403
           +  KY N C  D  + R  + CRL
Sbjct: 18  YQCKYGNNCEIDMYMRRKCQECRL 41


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 369 QSHMHLFQYLIAKCVH 322
           +SH +++QY  A C +
Sbjct: 37  KSHSNVYQYRCANCTY 52


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 322 VNTLCDQILEQVHVRLECPPEYEVVS 399
           +NTL ++ ++ V     C P+  +VS
Sbjct: 255 INTLLERSVDLVVTSTYCEPQVVIVS 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,326
Number of Sequences: 438
Number of extensions: 2245
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)