Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K18
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    28   0.73 
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    27   0.97 
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po...    25   3.9  
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    25   5.2  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   6.8  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   6.8  
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.8  

>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 27.9 bits (59), Expect = 0.73
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = -2

Query: 308 NEVGSIAYAATQVGIVNKFGEDSDVLYEVVADRPFMFFIQDEVTRQLLFTGRVS 147
           N+VG I  A   +GIV K G+ +     + AD     F    V+R LL+ GR+S
Sbjct: 773 NDVGMIQVANVGIGIVGKEGQQA----SLAADYSVKEF--SHVSRLLLWHGRIS 820


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 27.5 bits (58), Expect = 0.97
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 141 GFGDTPGEQQLPGDFVLDEEHERSIGHHLVEDVGIFSKLIYDTN 272
           G  +   EQ   GD ++   H + I     EDV  FS   YDTN
Sbjct: 519 GTREAVNEQIRKGDELMQRIHGKEISEMDGEDVSEFSDSDYDTN 562


>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -3

Query: 217 PIDRSCSSSRTKSPGNCCSPGVSPNPQSSGQLVNSKKKQI*PVHNLQFH 71
           PI  S S SRTKS  N  +  +SP      + V SK     P++ L+++
Sbjct: 280 PIPGSTSVSRTKSNLNALNKSLSPEQFKEAKEVLSKY----PIYGLRYN 324


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 382 PGNEAVPSKACLTPN 426
           PGNEA+PS + + PN
Sbjct: 280 PGNEALPSHSSVPPN 294


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 319 PHVCRTCDNLSASRTSCP 372
           P VCRTC   + + ++CP
Sbjct: 148 PRVCRTCHTDTHTSSTCP 165


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = -2

Query: 338 HVLQTCGIEVNEVGSIAYAATQVGIVNKFGEDSDVLYEVVADRPFMFFIQDEV 180
           ++   CG   N+VG++  A   V ++N   ED   + E   ++  M   + ++
Sbjct: 817 YITLMCGDGTNDVGALKQAHVGVALLNASEEDMLEMQERARNQKLMGVYEKQI 869


>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 168

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
 Frame = -3

Query: 256 SLEKIPTSSTRWWPIDRSCSSSRTKS----PGNCCSP----GVSPNPQSSGQLVNSKKKQ 101
           +LEK P +ST  W    +  S  T S    P +  SP    G+SP+   S   V+S +KQ
Sbjct: 93  TLEK-PIASTHRWLSKLTALSKSTNSTLSTPKSFHSPLQSRGISPSSAQSSAAVSSSRKQ 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,631,663
Number of Sequences: 5004
Number of extensions: 30995
Number of successful extensions: 84
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)