Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K18
         (441 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.069
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   2.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   4.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   6.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 27.5 bits (58), Expect = 0.069
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 43  KSMTLTQ*YYEIVNYEQVISVFF*SLRAAPTIAGSETRPVNSN 171
           KS T T   Y  +NY + I  FF S     T+ GS+   +NS+
Sbjct: 533 KSSTETPPSYNQLNYNENIERFFKSKPPVATMYGSDEEIINSS 575


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 204 ERSIGHHLVE 233
           ER IGHHL++
Sbjct: 196 ERQIGHHLIQ 205


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 150 DTPGEQQLPGDFVLDEEHERSIGHHLVED 236
           D P +Q+   D V + E+  S GH   +D
Sbjct: 685 DAPADQEGDDDQVDEREYPESHGHDSGQD 713


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 19  SIEKNDYIKSMTLTQ*YYEIVNYEQV 96
           +I  N+Y K +     YY I+N EQ+
Sbjct: 322 TIHNNNYNKKL-----YYNIINIEQI 342


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 88  HNLQFHNIIVSESCFLYSHSFQY 20
           HN+  +NI+ + +C L+   F +
Sbjct: 275 HNVFVNNILAASACSLFVVIFHF 297


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 211 DRSCSSSRTKSPGNCCSPGVSPNPQSSGQLVNSKKKQI*PVHN 83
           D+  SSS + +P + CS   S + +     V  +  Q  P+++
Sbjct: 590 DKPASSSASSAPTSVCSSPRSEDKEVEDMPVLKRVLQAPPLYD 632


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,531
Number of Sequences: 438
Number of extensions: 2227
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)