Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K17
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    27   2.2  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.6  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   6.6  

>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 238 YKQLTIKHVNHMNRYFLHTKQNSISTSFE 152
           Y +L + HV H+N YF      S++  FE
Sbjct: 71  YLELRVAHVEHLNPYFHAEAFASVNDCFE 99


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 130 NCKKKWI*VVHFSVDKFMHLHIQ 62
           N ++KWI  +H S  K++H+ IQ
Sbjct: 136 NVEQKWIQFLHKSWMKWLHISIQ 158


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 232 VCIHSY-SCSARENSIYFEALCNMN 303
           +CI +Y  C+ R++SIY   LC  N
Sbjct: 557 ICITNYYRCNVRDSSIYNVLLCCTN 581


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,321
Number of Sequences: 5004
Number of extensions: 45954
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)