Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K17
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0477 - 16393764-16394054,16394424-16394672,16394849-163949...    27   8.8  

>04_03_0477 -
           16393764-16394054,16394424-16394672,16394849-16394989,
           16395654-16395795,16396287-16396665,16397178-16397436,
           16398232-16398288
          Length = 505

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -2

Query: 389 DTIFFKHSTIAEIQWKATNKS-LDRDTLLPFMLHSASKYIEFSRAEQEYE*IQTTHNKTR 213
           +  F K + + E +W++TN++ L+  TLLP +    +  +  +    + +   T     R
Sbjct: 433 EAAFAKINALVEDEWRSTNQTRLEHRTLLPMVQRIVNFTVSMALFYDDKKDAYTFGTLLR 492

Query: 212 KPHESLF 192
           +  ESLF
Sbjct: 493 EIVESLF 499


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,099,285
Number of Sequences: 37544
Number of extensions: 224581
Number of successful extensions: 408
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)