Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K17
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical p...    28   3.4  
AF101316-5|AAC69233.2|   99|Caenorhabditis elegans Hypothetical ...    28   3.4  
AF100307-1|ABB88211.1|  317|Caenorhabditis elegans Hypothetical ...    28   3.4  
Z72502-12|CAI46558.2|  303|Caenorhabditis elegans Hypothetical p...    27   6.0  
AF022971-11|AAZ32813.1|  265|Caenorhabditis elegans Hypothetical...    27   6.0  
U88178-2|AAC24413.2|  166|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF068709-5|AAC19250.2|  332|Caenorhabditis elegans Serpentine re...    27   7.9  

>Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical
           protein F14F8.13 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +3

Query: 135 LYLRIYSNEVDIEFCFVCKK*RFMWFTCFIVSCLYSFIFL 254
           L L  Y NE   EFC VC    F  F  F++S L  FI++
Sbjct: 172 LSLAKYLNEEVSEFCIVCYIILFA-FLNFVISVLTPFIYI 210


>AF101316-5|AAC69233.2|   99|Caenorhabditis elegans Hypothetical
           protein F52F10.1 protein.
          Length = 99

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 504 TNRITNIYSFAPVKFYCINDNRQSFQMFLCFK 409
           TN+   +++F+  + Y  N N  SFQ FL F+
Sbjct: 7   TNKCQILHTFSFSRIYFFNHNSVSFQFFLVFQ 38


>AF100307-1|ABB88211.1|  317|Caenorhabditis elegans Hypothetical
           protein T12B5.6b protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 434 HFKCFYVSKLIEYNLDT 384
           HFKCFY+ KL E++  T
Sbjct: 225 HFKCFYIYKLDEFSAHT 241


>Z72502-12|CAI46558.2|  303|Caenorhabditis elegans Hypothetical
           protein C08B6.13 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +2

Query: 191 KIAIHVVYVF-YCELFVFIHIPVLHVRILYILRHYVT*MVIMYLYLNFCLLLSIEF 355
           KI  +  ++F Y    + +++   + +++   + Y+T M+ + L LNFC   S+E+
Sbjct: 5   KILTYATHLFSYSFNIILLYVVAKNSKVIKT-KGYITHMIWVELVLNFCQHFSVEY 59


>AF022971-11|AAZ32813.1|  265|Caenorhabditis elegans Hypothetical
           protein C31B8.16 protein.
          Length = 265

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +2

Query: 128 ILTLSPHLFE*GRYRILFRM*KIAIHVVYVFYCELFVFIHIPVLHVRILYILRHYVT*MV 307
           IL   PH     RY  L+ M  +   ++  F C LF+ + + ++ + ILY+L +Y     
Sbjct: 115 ILLHYPHYSFAARYPFLWVM--VEDIMIIAFACILFMSLGLLLIAICILYVLIYYELQRQ 172

Query: 308 IMYL 319
            MY+
Sbjct: 173 EMYM 176


>U88178-2|AAC24413.2|  166|Caenorhabditis elegans Hypothetical
           protein W09C3.3 protein.
          Length = 166

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 239 FIHIPVLHVRILYILRHYVT*MVIMYLYLN 328
           +I +PV+HV + Y L+  +   VI YL+++
Sbjct: 52  YISMPVVHVDLYYFLKEVLGEKVIDYLWMD 81


>AF068709-5|AAC19250.2|  332|Caenorhabditis elegans Serpentine
           receptor, class t protein29 protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/53 (20%), Positives = 30/53 (56%)
 Frame = +2

Query: 212 YVFYCELFVFIHIPVLHVRILYILRHYVT*MVIMYLYLNFCLLLSIEFQQLSN 370
           + ++ +  +F++    +  I + + +++   +   LY++FCL+L  + +Q SN
Sbjct: 180 HTWFFDPLIFVNRTDEYANIPHGVNNFLVVGITCLLYVSFCLVLGKKLEQASN 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,840,349
Number of Sequences: 27780
Number of extensions: 253332
Number of successful extensions: 641
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)