Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_K16
(414 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 229 1e-61
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 229 1e-61
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 229 1e-61
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 77 8e-16
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 44 1e-05
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 29 0.22
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 27 0.87
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 26 2.0
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 26 2.0
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 26 2.0
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 25 3.5
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 4.7
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 6.1
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 6.1
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 24 8.1
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 24 8.1
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 229 bits (560), Expect = 1e-61
Identities = 101/136 (74%), Positives = 119/136 (87%)
Frame = +2
Query: 5 EEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTP 184
+ +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+P
Sbjct: 298 DAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSP 357
Query: 185 VLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 364
VLDCHTAHIACKFAE+ EK+DRR+GK E++PK +KSGDA I +VPSKP+CVE+F ++
Sbjct: 358 VLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYA 417
Query: 365 PLGRFAVRDMRQTVAV 412
PLGRFAVRDMRQTVAV
Sbjct: 418 PLGRFAVRDMRQTVAV 433
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 229 bits (560), Expect = 1e-61
Identities = 101/136 (74%), Positives = 119/136 (87%)
Frame = +2
Query: 5 EEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTP 184
+ +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+P
Sbjct: 298 DAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSP 357
Query: 185 VLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 364
VLDCHTAHIACKFAE+ EK+DRR+GK E++PK +KSGDA I +VPSKP+CVE+F ++
Sbjct: 358 VLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYA 417
Query: 365 PLGRFAVRDMRQTVAV 412
PLGRFAVRDMRQTVAV
Sbjct: 418 PLGRFAVRDMRQTVAV 433
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 229 bits (560), Expect = 1e-61
Identities = 101/136 (74%), Positives = 119/136 (87%)
Frame = +2
Query: 5 EEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTP 184
+ +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+P
Sbjct: 298 DAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSP 357
Query: 185 VLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 364
VLDCHTAHIACKFAE+ EK+DRR+GK E++PK +KSGDA I +VPSKP+CVE+F ++
Sbjct: 358 VLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYA 417
Query: 365 PLGRFAVRDMRQTVAV 412
PLGRFAVRDMRQTVAV
Sbjct: 418 PLGRFAVRDMRQTVAV 433
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 77.4 bits (182), Expect = 8e-16
Identities = 43/134 (32%), Positives = 70/134 (52%)
Frame = +2
Query: 11 AVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVL 190
++ GD V V+ +++ GYV +KN P F AQ+ +L P ++ GY+ V+
Sbjct: 524 SICGDQVRLRVRGDD-SDVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCVM 581
Query: 191 DCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 370
HTA FA++ K+D +T + ++ P G I L P+C+E F+++ +
Sbjct: 582 HIHTAVEEVSFAKLLHKLD-KTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYM 640
Query: 371 GRFAVRDMRQTVAV 412
GRF +RD TVAV
Sbjct: 641 GRFTLRDQGTTVAV 654
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 43.6 bits (98), Expect = 1e-05
Identities = 40/133 (30%), Positives = 59/133 (44%)
Frame = +2
Query: 11 AVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVL 190
AV GD V + ++ V +LR G + + +N P R F A++ + G I +G T VL
Sbjct: 461 AVAGDTVTLQLADIEVNQLRPGDILSNYEN-PVRRVRSFVAEIQTFDIHGPILSGSTLVL 519
Query: 191 DCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 370
H+ + K+ K + + S K I L PLC+ +E P L
Sbjct: 520 -----HLGRTVTSVSLKIVTVNNKRSR-HIASRKRALVRISFLDGLFPLCLA--EECPAL 571
Query: 371 GRFAVRDMRQTVA 409
GRF +R TVA
Sbjct: 572 GRFILRRSGDTVA 584
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 29.5 bits (63), Expect = 0.22
Identities = 24/119 (20%), Positives = 49/119 (41%)
Frame = +2
Query: 5 EEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTP 184
+ AV GDN G ++++ ++L+RG + P F A +L + T
Sbjct: 309 DAAVAGDNCGLLLRSIKREQLKRGMIVAQPGTVAPH--QKFKASFYILTK--EEGGRRTG 364
Query: 185 VLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEF 361
+D + + + +++ ++ T D+ K + GD + P+ +E Q F
Sbjct: 365 FVDKYRPQLYSRTSDVTVEL---THPDPNDSDKMVMPGDNVEMICTLIHPIVIEKGQRF 420
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 27.5 bits (58), Expect = 0.87
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -1
Query: 309 MAASPDLMDLGLSSVDLPVRRSTFS 235
++ +PDL D+ LSSVD P++ +T S
Sbjct: 27 LSVAPDLADVLLSSVDQPLKVNTCS 51
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.2 bits (55), Expect = 2.0
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 109 QGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSPHSLQIC-RNQRESRP 249
+GS ++S + +S + I CIG+ SPH +C R Q +P
Sbjct: 90 KGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQLNGKP 137
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 2.0
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -1
Query: 330 LEGTRLTMAASPDLMDLGLSSVDLPVRRSTFSLISANLQAMWAVWQSNTGVYPF 169
LE R ++ +L+D LSSV L + + S++S+ + + + G+ PF
Sbjct: 122 LEVKRTEGVSTTELLDRLLSSVPLEIYSTPVSVLSSQIDLLRRFATDSDGLTPF 175
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 2.0
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 294 DLMDLGLSSVDL--PVRRSTFSLISANLQAMWAVWQSNTGVY 175
+L LG++ + P +RST S ++ L W + N GVY
Sbjct: 316 ELSKLGVTIIGSKDPKKRSTHSYVAKILNPEWDAFLKNEGVY 357
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 25.4 bits (53), Expect = 3.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 253 TTVDFLFDFGKFAGYVGCVAIQYRCVSV*YLTWV 152
T +D+LF F+ +G + Y ++V Y+ WV
Sbjct: 73 TLIDYLFFSPPFSLSIGPSLLVYLSIAVSYMLWV 106
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 4.7
Identities = 15/68 (22%), Positives = 33/68 (48%)
Frame = +3
Query: 18 PVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGELQTSQRKSLC*ITQVKYQTDTHLYWIA 197
P + +++ S + S + +VT ++ TTH +++T + T + D+H +
Sbjct: 379 PTSSILTNSGSIKSGDHQIVTTSFVQTTTHGSQVETLTYVTTLTETILTTTYDSHTFLTT 438
Query: 198 TQPT*PAN 221
P+ P+N
Sbjct: 439 ITPS-PSN 445
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 24.6 bits (51), Expect = 6.1
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -3
Query: 364 WEFLEGLHTQGLGGNQVDNGGITRFNGFRV 275
++FL+ + + LGGN + G+T G+ +
Sbjct: 389 YDFLQFMTSSPLGGNMACSAGLTSLLGYHL 418
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 24.6 bits (51), Expect = 6.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 234 LISANLQAMWAVWQSNTGV 178
L+SA+ W +W +TGV
Sbjct: 280 LVSASFDTTWRLWDVHTGV 298
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 24.2 bits (50), Expect = 8.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 146 LNHPGQISNGYTPVLDCHTAHIACK 220
L HP Q+SN +T C A AC+
Sbjct: 305 LPHPIQLSNYFTLPSSCAQADAACQ 329
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 24.2 bits (50), Expect = 8.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 82 NVTTAQFLDRYVFDVETNIVTGYS 11
++T F+D YV +++ IV G+S
Sbjct: 373 SLTDTSFMDDYVNELQLEIVPGFS 396
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,976,918
Number of Sequences: 5004
Number of extensions: 42841
Number of successful extensions: 122
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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