Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_K16
(414 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 229 5e-61
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 229 5e-61
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 229 5e-61
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 79 1e-15
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 40 0.001
U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical pr... 30 0.76
Z81476-10|CAN86579.1| 224|Caenorhabditis elegans Hypothetical p... 29 1.0
Z81476-1|CAB03921.2| 431|Caenorhabditis elegans Hypothetical pr... 29 1.0
AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical ... 29 1.0
Z81097-12|CAD56590.1| 457|Caenorhabditis elegans Hypothetical p... 28 2.3
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 2.3
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 2.3
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 2.3
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 27 4.1
Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical p... 27 5.4
U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical pr... 27 5.4
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr... 27 5.4
AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical ... 27 5.4
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 27 7.1
Z49068-4|CAC42319.1| 705|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z49068-3|CAA88862.1| 650|Caenorhabditis elegans Hypothetical pr... 27 7.1
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 27 7.1
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 27 7.1
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 27 7.1
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 27 7.1
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 27 7.1
AC024746-12|AAF60401.1| 142|Caenorhabditis elegans Hypothetical... 27 7.1
Z99277-6|CAB16484.1| 677|Caenorhabditis elegans Hypothetical pr... 26 9.4
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 26 9.4
U61947-10|AAB03132.1| 932|Caenorhabditis elegans Kinesin-like p... 26 9.4
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 26 9.4
AY211948-1|AAO34669.1| 932|Caenorhabditis elegans kinesin-like ... 26 9.4
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 26 9.4
AF022977-3|AAB88609.1| 554|Caenorhabditis elegans Hypothetical ... 26 9.4
AB033538-1|BAB19356.2| 930|Caenorhabditis elegans kinesin like ... 26 9.4
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 229 bits (561), Expect = 5e-61
Identities = 105/135 (77%), Positives = 117/135 (86%)
Frame = +2
Query: 8 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPV 187
EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQVI++NHPGQISNGYTPV
Sbjct: 267 EAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPV 326
Query: 188 LDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 367
LDCHTAHIACKF E+KEKVDRRTGK ED PK +KSGDA IV L+P+KPLCVESF ++ P
Sbjct: 327 LDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAP 386
Query: 368 LGRFAVRDMRQTVAV 412
LGRFAVRDMRQTVAV
Sbjct: 387 LGRFAVRDMRQTVAV 401
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 229 bits (561), Expect = 5e-61
Identities = 105/135 (77%), Positives = 117/135 (86%)
Frame = +2
Query: 8 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPV 187
EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQVI++NHPGQISNGYTPV
Sbjct: 301 EAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPV 360
Query: 188 LDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 367
LDCHTAHIACKF E+KEKVDRRTGK ED PK +KSGDA IV L+P+KPLCVESF ++ P
Sbjct: 361 LDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAP 420
Query: 368 LGRFAVRDMRQTVAV 412
LGRFAVRDMRQTVAV
Sbjct: 421 LGRFAVRDMRQTVAV 435
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 229 bits (561), Expect = 5e-61
Identities = 105/135 (77%), Positives = 117/135 (86%)
Frame = +2
Query: 8 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPV 187
EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQVI++NHPGQISNGYTPV
Sbjct: 301 EAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPV 360
Query: 188 LDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 367
LDCHTAHIACKF E+KEKVDRRTGK ED PK +KSGDA IV L+P+KPLCVESF ++ P
Sbjct: 361 LDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAP 420
Query: 368 LGRFAVRDMRQTVAV 412
LGRFAVRDMRQTVAV
Sbjct: 421 LGRFAVRDMRQTVAV 435
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 79.4 bits (187), Expect = 1e-15
Identities = 43/136 (31%), Positives = 73/136 (53%)
Frame = +2
Query: 5 EEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTP 184
E V GDN+ F +K + EL+ G++ + G F A+V+VL H I++GY+
Sbjct: 392 ERVVAGDNIKFKLKGIEENELQGGFIICSPDSLAKTGRV-FDAEVLVLEHRSIIASGYSC 450
Query: 185 VLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 364
VL +A + +D++TG+ + K +K + I+ L +P +E F+E+P
Sbjct: 451 VLHIQSAVEEVTVKGVIATIDKKTGE--KKRAKFVKQDEKCIMRLESPEPFVLEPFKEYP 508
Query: 365 PLGRFAVRDMRQTVAV 412
LGRF +RD +T+A+
Sbjct: 509 YLGRFTLRDEGKTIAI 524
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/95 (22%), Positives = 40/95 (42%)
Frame = +2
Query: 125 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDA 304
F +++ I G L H+ + C F + +++ G+ + P+ I G +
Sbjct: 487 FEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGAS 546
Query: 305 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVA 409
A+V + + +E+F LGR R T+A
Sbjct: 547 AVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIA 581
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/95 (22%), Positives = 40/95 (42%)
Frame = +2
Query: 125 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDA 304
F +++ I G L H+ + C F + +++ G+ + P+ I G +
Sbjct: 505 FEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGAS 564
Query: 305 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVA 409
A+V + + +E+F LGR R T+A
Sbjct: 565 AVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIA 599
>U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical
protein C10G11.6 protein.
Length = 425
Score = 29.9 bits (64), Expect = 0.76
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1
Query: 190 GLPHSPHSLQICRNQRESRPSYW*INR 270
GL HSPHS N R S P ++ INR
Sbjct: 47 GLVHSPHSSFTTENLRSSDPMFFDINR 73
>Z81476-10|CAN86579.1| 224|Caenorhabditis elegans Hypothetical
protein C25F9.13 protein.
Length = 224
Score = 29.5 bits (63), Expect = 1.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 249 VVLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWSPSRNSHP 368
++L++ T L L + P + W PPS C P+ ++ P
Sbjct: 149 LILISSLITCFLNLKLSIVPSTKWRPPSSCTMYPANSTFP 188
>Z81476-1|CAB03921.2| 431|Caenorhabditis elegans Hypothetical
protein C25F9.1 protein.
Length = 431
Score = 29.5 bits (63), Expect = 1.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 249 VVLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWSPSRNSHP 368
++L++ T L L + P + W PPS C P+ ++ P
Sbjct: 149 LILISSLITCFFNLKLEIVPSTKWRPPSSCTMYPANSTFP 188
>AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical
protein Y71D11A.1 protein.
Length = 506
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 222 LPKSKRKSTVVLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWS 347
LPK+ T V + TT+ P +PP +T PP +S
Sbjct: 264 LPKTTVAPTTTTVPRTTTTVPPTTTTVPPTTTTVPPITTTYS 305
>Z81097-12|CAD56590.1| 457|Caenorhabditis elegans Hypothetical
protein K07A1.9b protein.
Length = 457
Score = 28.3 bits (60), Expect = 2.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 398 ASCHARRNDRGVGIPGRTPHTGAW 327
+SC +NDRG P R+ +GAW
Sbjct: 15 SSCGYCKNDRGERTPARSAKSGAW 38
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 2.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 188 LDCHTAHIACKFAEIKEKVDRRTGKSTE 271
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 2.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 188 LDCHTAHIACKFAEIKEKVDRRTGKSTE 271
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 2.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 188 LDCHTAHIACKFAEIKEKVDRRTGKSTE 271
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 138 TCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTASS 4
T A +AAP GGLF + T P T T +P TA++
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAAT 512
>Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +2
Query: 95 KNNPPRGAAD-FTAQVIVLNHP 157
K NPP+GAAD F +V+ L+ P
Sbjct: 279 KANPPQGAADKFHVKVVTLHEP 300
>Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +2
Query: 95 KNNPPRGAAD-FTAQVIVLNHP 157
K NPP+GAAD F +V+ L+ P
Sbjct: 279 KANPPQGAADKFHVKVVTLHEP 300
>U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical
protein F47C10.4 protein.
Length = 357
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 105 HPGELQTSQRKSLC*ITQVKYQTDTHLYWI 194
H G + ++ SLC +T Y+ +LYWI
Sbjct: 311 HNGSSRFTELLSLCTVTNKYYEDVQYLYWI 340
>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical protein
C46A5.4 protein.
Length = 1432
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 2 HEEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRG 115
++EA+P N + ++V RR +VAGD ++N G
Sbjct: 982 NKEALPQGNQERDCRSVLQNRQRRCFVAGDERSNEQPG 1019
>AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical
protein Y55F3AM.9 protein.
Length = 379
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +2
Query: 224 AEIKEKVDRRTGKSTEDNPKS 286
AEI + +D+ GKSTE++P++
Sbjct: 27 AEILQSLDKSLGKSTEESPEA 47
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 90 SPAT*PRRNSLTDTFLTLKPTLSPGTASS 4
+P+T P S TD L LKPT +P T S+
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSA 132
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 90 SPAT*PRRNSLTDTFLTLKPTLSPGTASS 4
+P+T P S TD L LKPT +P T S+
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSA 132
>Z49068-4|CAC42319.1| 705|Caenorhabditis elegans Hypothetical
protein K01C8.3b protein.
Length = 705
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 294 LVMPPLSTWFPPSPCVWSPSRNSHPSVVS 380
L+MP ++ W P + P+ NS PS+++
Sbjct: 139 LIMPGITHWQHPRFHAYFPAGNSFPSIIA 167
>Z49068-3|CAA88862.1| 650|Caenorhabditis elegans Hypothetical
protein K01C8.3a protein.
Length = 650
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 294 LVMPPLSTWFPPSPCVWSPSRNSHPSVVS 380
L+MP ++ W P + P+ NS PS+++
Sbjct: 139 LIMPGITHWQHPRFHAYFPAGNSFPSIIA 167
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 90 SPAT*PRRNSLTDTFLTLKPTLSPGTASS 4
+P+T P S TD L LKPT +P T S+
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSA 132
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 90 SPAT*PRRNSLTDTFLTLKPTLSPGTASS 4
+P+T P S TD L LKPT +P T S+
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSA 132
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 5 EEAVPGDNVGFNVKNVSVKELRRGYV 82
++A PGD +G ++ + K++RRG V
Sbjct: 311 DQAEPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 5 EEAVPGDNVGFNVKNVSVKELRRGYV 82
++A PGD +G ++ + K++RRG V
Sbjct: 312 DQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 5 EEAVPGDNVGFNVKNVSVKELRRGYV 82
++A PGD +G ++ + K++RRG V
Sbjct: 312 DQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024746-12|AAF60401.1| 142|Caenorhabditis elegans Hypothetical
protein Y110A2AL.1 protein.
Length = 142
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 68 RRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQI 166
RR Y D P+GA DF AQ++ PG I
Sbjct: 64 RRHYF--DLHGMTPQGAVDFVAQIVEGRRPGYI 94
>Z99277-6|CAB16484.1| 677|Caenorhabditis elegans Hypothetical
protein Y53C12A.1 protein.
Length = 677
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 240 KSTVVLVNQQRTTLNP-LNLVMPPLSTWFPPSPCVWSPSRNSHPSVVSP 383
+ T + ++R + P P + PP+ +WS + S P +V+P
Sbjct: 36 RETPLSTKRERQAITPRFRRPAPKMIKTMPPTRSIWSVRKESVPLLVTP 84
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 17 PGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNH 154
PG+ ++ LRRG V + + PP +FTA +++L H
Sbjct: 465 PGEAASISLNLPDGVSLRRGMVLAEIDHQPP-VCYEFTANLLLLCH 509
>U61947-10|AAB03132.1| 932|Caenorhabditis elegans Kinesin-like
protein protein 18 protein.
Length = 932
Score = 26.2 bits (55), Expect = 9.4
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 188 LDCHTAHIACKFAEIKEKVDRRTGKSTE 271
L C ++C+ + +K+K + T KS E
Sbjct: 527 LQCQNEKLSCELSSLKDKHEEATSKSIE 554
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 26.2 bits (55), Expect = 9.4
Identities = 23/74 (31%), Positives = 29/74 (39%)
Frame = +3
Query: 171 TDTHLYWIATQPT*PANLPKSKRKSTVVLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWSP 350
T T + I T PT PANL T VN +T P V P T P P V +
Sbjct: 508 TPTTVGTIGTSPTAPANL----TTPTTAPVNPTSSTTAPTAPVNPTSPTTAPTVPPVTTT 563
Query: 351 SRNSHPSVVSPCVT 392
+ + S + T
Sbjct: 564 TPTTTTSTTTTTTT 577
>AY211948-1|AAO34669.1| 932|Caenorhabditis elegans kinesin-like
protein-18 protein.
Length = 932
Score = 26.2 bits (55), Expect = 9.4
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 188 LDCHTAHIACKFAEIKEKVDRRTGKSTE 271
L C ++C+ + +K+K + T KS E
Sbjct: 527 LQCQNEKLSCELSSLKDKHEEATSKSIE 554
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 134 QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKE 238
Q+++LNHP QI +L A C+F ++E
Sbjct: 1375 QILLLNHPNQIGKSTCYILMSDVAKY-CRFLVVEE 1408
>AF022977-3|AAB88609.1| 554|Caenorhabditis elegans Hypothetical
protein ZK994.1 protein.
Length = 554
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 82 NVTTAQFLDRYVFDVETN 29
N TTA FLD Y+F V T+
Sbjct: 384 NSTTATFLDDYIFHVPTS 401
>AB033538-1|BAB19356.2| 930|Caenorhabditis elegans kinesin like
protein KLP-18 protein.
Length = 930
Score = 26.2 bits (55), Expect = 9.4
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 188 LDCHTAHIACKFAEIKEKVDRRTGKSTE 271
L C ++C+ + +K+K + T KS E
Sbjct: 525 LQCQNEKLSCELSSLKDKHEEATSKSIE 552
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,361,604
Number of Sequences: 27780
Number of extensions: 270499
Number of successful extensions: 898
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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