Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_K15
(583 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 34 0.017
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 31 0.093
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 31 0.12
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 30 0.21
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 29 0.37
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 29 0.37
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb... 29 0.37
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 29 0.50
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc... 29 0.65
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 29 0.65
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 28 0.87
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 0.87
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 27 2.0
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 27 2.0
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 27 2.6
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 26 4.6
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 4.6
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 26 4.6
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 26 4.6
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 25 6.1
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 6.1
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 25 8.1
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 25 8.1
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 25 8.1
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 33.9 bits (74), Expect = 0.017
Identities = 20/77 (25%), Positives = 39/77 (50%)
Frame = +1
Query: 4 RGSMVQQVSELSNSLQGALTDANGKAKEVLQQARQNLERTVEDLRKAHPDVEKQATALHE 183
+ +++ + + N+L+ + + K E Q + Q+L+R + + +K H E Q L
Sbjct: 481 KSALIDKKDQELNNLREQIKEQK-KVSESTQSSLQSLQRDILNEKKKHEVYESQLNELKG 539
Query: 184 KLQTAIQNTLKESQNLA 234
+LQT I N+ S L+
Sbjct: 540 ELQTEISNSEHLSSQLS 556
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 31.5 bits (68), Expect = 0.093
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Frame = +1
Query: 67 ANGKAKEV--LQQARQNLERTVEDLRK--AHPDVEKQATALHEKLQTAIQNTLKESQ--- 225
A K KE+ LQQ R NLER +D+ +E+ A EK + +QN +K S+
Sbjct: 237 ARNKQKEINILQQIRFNLERICQDIGNFDVRSRIERAARQAREKNEKLLQN-VKTSEIPI 295
Query: 226 NLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQKKVHEAAT 357
N A G+N + + ++++ D E Q+ E A+
Sbjct: 296 NAADLEGIN-PELLPVIEEEIRSFRDQSAMKKREKQRSKDEYAS 338
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 31.1 bits (67), Expect = 0.12
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Frame = +1
Query: 76 KAKEVLQ---QARQNLERTVEDLRK---AHPD-VEKQATALHEKLQTAIQNTLKESQNLA 234
K KE ++ Q ++ LER VE+LRK + D VE +A + + + E Q L
Sbjct: 128 KEKEEMEGSLQGKEKLEREVENLRKELDKYKDLVETEAEKRAAITKEECEKSWLEQQKLY 187
Query: 235 KEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQKKVHEAA 354
K++ T QKL K++ + H ++Q +E+A
Sbjct: 188 KDMEQENASTIQKLTSKIRELQASQLDH--DLQASQNESA 225
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 30.3 bits (65), Expect = 0.21
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Frame = +1
Query: 25 VSELSNSLQGALTDANGKAKEVLQQARQNLERTVED----LRKAHPDVEKQATALHEKLQ 192
VS+ N LQ +N K + + + N+ + + + HPDV+ QA+
Sbjct: 227 VSQQENQLQDEALTSNSKNADAIGASDANVATAPKSWADLIARNHPDVKSQAS------- 279
Query: 193 TAIQNTLKESQNLAKEVGVNMDQTSQKLAP 282
+ +T + K GVN DQT Q AP
Sbjct: 280 --VSSTASTTGQTVK--GVNADQTQQPTAP 305
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 29.5 bits (63), Expect = 0.37
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 147 PRRRETSHRITREAANRHPEHTKGEPEPGEGSRRQHGSDLTETGAKTESGIR 302
P R ++ ++RE NR T+ G + HGS LT+TG + ++
Sbjct: 15 PSRASSNTHLSREGTNRSSNVTRTV----SGRKSNHGSSLTDTGESDQLSLK 62
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 29.5 bits (63), Expect = 0.37
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Frame = +1
Query: 76 KAKEVLQQARQNLERTVEDLRKAHP--DVEKQATALHEKLQTAIQNTLKESQNLAKEVGV 249
KAK L+ ++LE D +A VEKQ +++E+L+ + + +E
Sbjct: 636 KAKGGLEVNAEDLEHLDADKLRAMQIEQVEKQNKSMNERLRVIGKRIDHLERAYRREAIP 695
Query: 250 NMDQTSQKLAPKLKAAYDDFVKHAEEVQKKVHEAATKQ*RA 372
++ +++ A + + + K +EVQ++ HE A K +A
Sbjct: 696 LWEEDAKQQAEHDREIFYEREKQRKEVQERKHEQAIKDKKA 736
>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 175
Score = 29.5 bits (63), Expect = 0.37
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +1
Query: 91 LQQARQNLERTVEDLRKAHPDVEK 162
++QAR E T+ED+++A P++EK
Sbjct: 126 IEQARPTEEITIEDMKQAVPEIEK 149
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 29.1 bits (62), Expect = 0.50
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Frame = +1
Query: 7 GSMVQQVSELSNSLQGALTDANG---KAKEVLQQARQNLERTVEDLR----KAHPDVEKQ 165
GS++++V +L +QG L +A K E+ Q +QN E E L+ K D +K
Sbjct: 649 GSLIEKVGKLEYEVQGTLEEATSYYQKNTELQQLLKQN-ESASELLKSRNEKLCVDYDKL 707
Query: 166 ATALHEKLQTAIQNTLKESQNLAKEV 243
+ E + I + KE++NL ++
Sbjct: 708 RSVFEED-SSKILSLQKENENLQSQI 732
>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 28.7 bits (61), Expect = 0.65
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 70 NGKAKEVLQQARQNLERTVEDLRKAHPDVEKQATALHE----KLQTAIQNTLKESQNLA 234
NG A+E+ A + L VE+LRKA D+E++ L + KL +N + LA
Sbjct: 66 NGNAEEIF--ANKRLRVCVEELRKARLDLEEENDDLDKIGALKLHVVSENNFPTAAGLA 122
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 28.7 bits (61), Expect = 0.65
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Frame = +1
Query: 22 QVSELSNSLQGALTDANGKAKEVLQQARQNLERTVEDLRKAHPDVE------KQATALHE 183
Q +E SN+ A ++ + + +E L L TV + R + + + A+ ++E
Sbjct: 550 QSNETSNTFPAASSNISSQLRE-LHTKIDELRETVSNFRADYNSIRTSLNQLEAASGINE 608
Query: 184 KLQTAIQNTLKESQNLAKEVGVNMDQTS 267
++QT ++L S ++ G QTS
Sbjct: 609 RIQTTSADSLLNSNGMSGTEGFENTQTS 636
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 28.3 bits (60), Expect = 0.87
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = +3
Query: 39 QQSTGCVDRRKR*S*GSAPTSSPELGAHSRGSPQGAPRRRETSHRITREAANRHP---EH 209
QQST RK S P+ P G H+R + + ET H ++ P +H
Sbjct: 667 QQSTVSNHHRKE----SIPSKQPTEGQHARQESLPSQQTTETKHLRKESTPSKQPTEGQH 722
Query: 210 TKGEPEPGE 236
T+ E P +
Sbjct: 723 TRQESLPSQ 731
Score = 25.0 bits (52), Expect = 8.1
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +3
Query: 39 QQSTGCVDRRKR*S*GSAPTSSPELGAHSRGSPQGAPRRRETSHRITREAANRHP---EH 209
QQ+T RK S P+ P G H+R + + ET H ++ P +H
Sbjct: 699 QQTTETKHLRKE----STPSKQPTEGQHTRQESLPSQQTTETKHLRKESIPSKQPTEGQH 754
Query: 210 TKGEPEPGE 236
+ E P +
Sbjct: 755 ARQESLPSQ 763
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 28.3 bits (60), Expect = 0.87
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Frame = +1
Query: 13 MVQQVSELSNSLQGALTDANGKAKEVLQQARQNLERTVEDLRKAHPDVEKQ------ATA 174
++++ L+N L +A + E +Q L EDLRK D EK+ A +
Sbjct: 1016 LLEENKHLNNELSSH-RNAEKQHLEKENDYKQQLLLVTEDLRKTREDYEKELLRHADARS 1074
Query: 175 LHEKLQTAIQNTLKESQNLAKEVGV 249
+KL+ L++ ++L KE+ +
Sbjct: 1075 TLQKLREDYTKALEQVEDLNKEIAL 1099
Score = 26.6 bits (56), Expect = 2.6
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +1
Query: 13 MVQQVSELSNSLQGALTDANGKAKEVLQQARQNLERTVEDLRKAHPDVEKQATALHEKLQ 192
+VQ+ S L + L +D + K E L+ + R V+DL K + +Q T L+EK+Q
Sbjct: 194 LVQEKSALVSDLASLQSD-HSKVCEKLEVS----SRQVQDLEKKLAGLAQQNTELNEKIQ 248
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/44 (22%), Positives = 26/44 (59%)
Frame = +1
Query: 94 QQARQNLERTVEDLRKAHPDVEKQATALHEKLQTAIQNTLKESQ 225
++AR+NL+ V + + P+++ + + +L+ I+++L Q
Sbjct: 85 RKARENLKVNVSSIGEVLPEIDLDISVANSRLKPVIKDSLSSKQ 128
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +1
Query: 58 LTDANGKAKEVLQQARQNLERTVEDLRKAHPD---VEKQATALHEKLQTAIQNTLKESQN 228
+ +A KA++ L+Q + E L K H + E++ + EKL ++ K S+
Sbjct: 52 INEAQKKAEKSLEQTEARKQNFTELLEKEHEEQAITEQEIFSFQEKLDAMLKRKQKLSEE 111
Query: 229 L 231
L
Sbjct: 112 L 112
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 115 ERTVEDLRK-AHPDVEKQATALHEKLQTAIQNTLKES 222
ERT E + A D+EKQ + H++ Q+++ + L+ES
Sbjct: 3 ERTSESSSESASFDLEKQQSNHHDRYQSSVSSELEES 39
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.8 bits (54), Expect = 4.6
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 70 NGKAKEVLQQARQNLERTVEDLRKAHPDVEKQATALHEKLQTA 198
N +K L+ AR +L+ ++ED KA+ + E+ LQT+
Sbjct: 33 NQLSKLKLEDARADLQSSMEDSNKANGNGEETTDGAEGVLQTS 75
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 4.6
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 121 TVEDLRKAHPDVEKQATALHEKLQTAIQNT-LKESQNLAKEVGVNMDQTSQKLAPKLKAA 297
++ED + P ++ K + QN K++ K+ G+N +QTS + P ++
Sbjct: 1551 SLEDSNRQKPFNGEKFRRFSSKSRRGSQNRDSKKTGKARKDKGINNNQTSPQNKPSKESL 1610
Query: 298 YDDFVKHAEEV 330
D + + ++V
Sbjct: 1611 KSDTISNEKKV 1621
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 4.6
Identities = 15/107 (14%), Positives = 48/107 (44%)
Frame = +1
Query: 4 RGSMVQQVSELSNSLQGALTDANGKAKEVLQQARQNLERTVEDLRKAHPDVEKQATALHE 183
R S+ + ++++++ + +TD + + + + + + + V K T +
Sbjct: 283 RSSVNKGMTDVASQVNRGMTDVASQVNKGVNGVASQVNKGMNGVAN---QVNKGVTGVAS 339
Query: 184 KLQTAIQNTLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAE 324
+++ + K+ +NL K +G + + + K + +DF ++ +
Sbjct: 340 QVRKPVGKLEKKFENLEKSIGDTLKSSIRSSPKSKKRSREDFEENED 386
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 58 LTDANGKAKEVLQQARQN 111
LTD AKE+LQQAR N
Sbjct: 83 LTDVLSNAKELLQQARLN 100
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 25.4 bits (53), Expect = 6.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 110 FWRACWSTSLALPFASVNAPCRLLDN 33
F C S +L+LP +N P R+ D+
Sbjct: 199 FCNQCSSKTLSLPHLGINQPVRVCDS 224
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 6.1
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Frame = +1
Query: 55 ALTDANGKAKEVLQQARQNLERTVEDLRKAHPDVEKQATALHEKLQTAIQ-NTLKESQNL 231
ALT A + Q E+T++DL + ++A E+LQ A Q N S+ L
Sbjct: 82 ALTGAPIRIVTTTNARIQPDEKTLQDLLEQRQVALREAREAEEELQRARQYNDRSTSEAL 141
Query: 232 AKEVGVNMDQTSQKLA-PKLKAAYDDFVKHAEEVQKKVHEAATKQ*RAL 375
E +LA + + A + A +K+ E A + AL
Sbjct: 142 ELEARAKKAAQDAELASERAREAQSSIERSASLREKQAREEAERAATAL 190
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +1
Query: 157 EKQATALHEKLQTAIQNTLKE--SQ-NLAKEVGVNMDQTSQKLAPKLKAAYD 303
EKQ HEK+ ++ LKE SQ N AK++ ++ +Q + K+ ++
Sbjct: 234 EKQRNTEHEKIIRRMKKELKELHSQFNFAKKLFISALSANQDILDKMNDEFN 285
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 58 LTDANGKAKEVLQQARQNLERT 123
L D+ KAK L+QAR LERT
Sbjct: 401 LLDSIKKAKTELEQARIELERT 422
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 113 WSAQSRISARRTPTSRNKPPHYTRSCKPP 199
+ QSR S S N PP+ TR+ P
Sbjct: 103 FEVQSRYSGALKEVSSNTPPNMTRAASQP 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,475
Number of Sequences: 5004
Number of extensions: 33394
Number of successful extensions: 162
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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