Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_K14
(577 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 33 0.030
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.37
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.0
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 2.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 2.0
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb... 26 3.4
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 26 4.5
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 25 6.0
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 25 6.0
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 7.9
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 7.9
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 25 7.9
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 33.1 bits (72), Expect = 0.030
Identities = 21/79 (26%), Positives = 43/79 (54%)
Frame = -1
Query: 286 ATVASSRNGTR*PTDSLGRVSLFSDSNCCREKTGAAGNSSENIATSSSFSVAFNCIAGQE 107
+T++SS + + PT + +S S S+ T ++ + S + + SSS + + + I+
Sbjct: 288 STISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSS 347
Query: 106 PSRVASLFTARSTSSVSQS 50
S +S F++ ++SS S S
Sbjct: 348 SSPSSSSFSSTTSSSKSSS 366
Score = 27.9 bits (59), Expect = 1.1
Identities = 23/89 (25%), Positives = 41/89 (46%)
Frame = -1
Query: 280 VASSRNGTR*PTDSLGRVSLFSDSNCCREKTGAAGNSSENIATSSSFSVAFNCIAGQEPS 101
++SS + + PT + +S S S+ T S I++SSS S +F+
Sbjct: 273 ISSSSSSSSSPTSTSSTISSSSSSSSSPTST------SSTISSSSSSSSSFSSTLSSSSM 326
Query: 100 RVASLFTARSTSSVSQSGAAADGCSIVTF 14
+S F++ TSS S +++ S +F
Sbjct: 327 SSSSSFSSSPTSSSSTISSSSSSPSSSSF 355
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 29.5 bits (63), Expect = 0.37
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 2/151 (1%)
Frame = -1
Query: 484 TARDTWWTVSELGTEGSAVRLARRSPAPGLYTATYPVWPAFHLAQAMSLLSVELTVDIGM 305
T DTW T E + V + P+ LY + V+P + Q + TVD
Sbjct: 23 TNGDTWQTNGEEQITWNVV--STDEPSAALYLTNFAVYPT--VTQYLD------TVDTST 72
Query: 304 TLYCPCATVASSRNGTR*PTDSLGRVS-LFSDSNCCREKTGAAGNSSENIATSSSF-SVA 131
Y T + G + GR +++ S GAA +SS + ++SSS S
Sbjct: 73 GSYTTNTTNWPTGQGFQINMAYPGRPEQIYAQSQQFNIVEGAASSSSSSSSSSSSLVSST 132
Query: 130 FNCIAGQEPSRVASLFTARSTSSVSQSGAAA 38
+ + PS +S ++ S+SS S S +++
Sbjct: 133 TSSSSSATPSTTSSSSSSSSSSSSSSSKSSS 163
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.1 bits (57), Expect = 2.0
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = -1
Query: 286 ATVASSRNGTR*PTDSLGRVSLFSDSNCCREKTGAAGNSSENIATSSSFSVAFNCIAGQE 107
AT+ SS + + PT S +L S S+ + ++G SS +++ SSS +
Sbjct: 104 ATLTSSSSAS--PTSSSSSHALSSSSSSLVASSSSSGMSSSSLSHSSSVP------SSSS 155
Query: 106 PSRVASLFTARSTSSVS-QSGAAADGCSIVT 17
+S+ T+ +SS S S DG SI+T
Sbjct: 156 SYHSSSMTTSGLSSSASIVSSTYRDGPSIIT 186
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 27.1 bits (57), Expect = 2.0
Identities = 19/75 (25%), Positives = 33/75 (44%)
Frame = -1
Query: 286 ATVASSRNGTR*PTDSLGRVSLFSDSNCCREKTGAAGNSSENIATSSSFSVAFNCIAGQE 107
AT A+ G+ + ++F +N TG G++ N ATS++ + F
Sbjct: 506 ATNATGTGGSLFGNANTAGSNMFGSANSSTPGTGLFGSTQTNNATSNTGTGLFGSNNANT 565
Query: 106 PSRVASLFTARSTSS 62
+ SLF ST++
Sbjct: 566 TNTGGSLFNKPSTTT 580
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.1 bits (57), Expect = 2.0
Identities = 22/84 (26%), Positives = 40/84 (47%)
Frame = -1
Query: 277 ASSRNGTR*PTDSLGRVSLFSDSNCCREKTGAAGNSSENIATSSSFSVAFNCIAGQEPSR 98
+SS T P+ S S S S+ + ++ +SS + ++SSS S + + + S
Sbjct: 146 SSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-SSSSSSSSSSSSSSSSSSSS 204
Query: 97 VASLFTARSTSSVSQSGAAADGCS 26
+S+ STSS S +++ S
Sbjct: 205 SSSVPITSSTSSSHSSSSSSSSSS 228
Score = 25.4 bits (53), Expect = 6.0
Identities = 19/80 (23%), Positives = 39/80 (48%)
Frame = -1
Query: 265 NGTR*PTDSLGRVSLFSDSNCCREKTGAAGNSSENIATSSSFSVAFNCIAGQEPSRVASL 86
NG T S VS + S+ + ++ ++ + ++SSS S + + + S +S
Sbjct: 120 NGVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSS 179
Query: 85 FTARSTSSVSQSGAAADGCS 26
++ S+SS S S +++ S
Sbjct: 180 SSSSSSSSSSSSSSSSSSSS 199
>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 631
Score = 26.2 bits (55), Expect = 3.4
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3
Query: 192 FSLQQLLSENNETLPSESVGHLVP 263
F L QLL+ENNE P+ V HL P
Sbjct: 594 FLLAQLLNENNE--PTTKVVHLQP 615
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.8 bits (54), Expect = 4.5
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 426 LTALPSVPSSLTVHHVSRAVKHYTNYTNNYPEHADNVLVPGKSTVVL 566
L + +V SLT H K YTN NN+ ++ + ++ ++T+ L
Sbjct: 430 LPKIVTVLDSLTSEHKDLVDKVYTNVLNNHCKNLEKLIELVETTIDL 476
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.4 bits (53), Expect = 6.0
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = -1
Query: 226 SLFSDSNCCREKTGAAGNSSENIATSSSFSVAFNCIAGQEPSRVASLFTARSTSSVSQSG 47
S S + +E AAG++ + ++S + A + + VAS A S + VS S
Sbjct: 53 SAISTNGAAKEAATAAGDAETTSSVAASVTPAASSSVAASVTPVASSSVAASVTPVSSSA 112
Query: 46 AAADGCS 26
S
Sbjct: 113 VVDSATS 119
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.4 bits (53), Expect = 6.0
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -1
Query: 220 FSDSNCCREKTGAAGNSS 167
F DS+CC ++TG+ G ++
Sbjct: 30 FVDSDCCFQETGSTGTAN 47
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 175 NSSENIATSSSFSVAFNCIAGQEPSRVAS 89
+++ + TSS FS FN +AG E S+ ++
Sbjct: 274 HAAPSTTTSSRFSKFFNGLAGPETSKTST 302
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 25.0 bits (52), Expect = 7.9
Identities = 16/76 (21%), Positives = 32/76 (42%)
Frame = +3
Query: 102 LGSWPAIQLKATEKDEEVAIFSLLLPAAPVFSLQQLLSENNETLPSESVGHLVPLREDAT 281
L ++P+I + A+E D +I + + + +L + +E +P +
Sbjct: 637 LSTFPSIDIPASEADNVYSILPIDVSTSEAEGAYSILPIDVPKSVAEETYSFLPSDVPKS 696
Query: 282 VAHGQYSVMPISTVNS 329
A YS++PI S
Sbjct: 697 EAEKVYSILPIDVPQS 712
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 420 ANLTALPSVPSSLTVHHVSRAVKHYTNYTNN 512
+N ++LPS+PSS + +S ++ H T+ +N
Sbjct: 114 SNSSSLPSIPSSSSTPSIS-SIPHTTSSVSN 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,591
Number of Sequences: 5004
Number of extensions: 43516
Number of successful extensions: 158
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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