Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_K14
(577 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0866 + 6582131-6583294 31 0.87
01_06_1557 - 38231826-38233391 31 0.87
05_04_0284 - 19813179-19813340,19813464-19813748,19813850-198141... 30 1.5
03_04_0193 + 18344984-18345946 29 2.0
02_05_0740 - 31404004-31404180,31404365-31405261,31405351-314059... 29 2.7
04_03_0866 + 20407242-20407575,20407665-20407724,20408298-204083... 29 3.5
07_03_0394 - 17633753-17636788 28 4.6
03_06_0604 - 35006004-35008580 28 4.6
02_01_0788 - 5912821-5913392,5913453-5913953,5914030-5914117 28 4.6
01_07_0074 - 40894916-40895754,40896322-40896691,40897239-408972... 28 4.6
10_01_0290 + 2999775-2999928,3000281-3000816 27 8.1
08_01_0049 - 346200-347213 27 8.1
02_04_0059 + 19342457-19342852 27 8.1
>06_01_0866 + 6582131-6583294
Length = 387
Score = 30.7 bits (66), Expect = 0.87
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -3
Query: 401 GVVHRHVPGVASLPSRTSYELVVGGVDGRYRHDAVLSVCDGRVLAQRHQVTHRLAGQS 228
GVV + A+ P RTS + VDGR R + ++C RV ++ H+ G++
Sbjct: 41 GVVGANGSAAAAPPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGET 98
>01_06_1557 - 38231826-38233391
Length = 521
Score = 30.7 bits (66), Expect = 0.87
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Frame = +1
Query: 169 CCYRLHRSSLCNSCYLKIMKLCPA-SLWVTWCRCART-RPSHTDSTASCRYRXXXXXXXX 342
CC R+H S + I KL + +WCR A RPS +
Sbjct: 280 CCVRVH------SIFTSIAKLFDELDEFYSWCRSATICRPSEIPEVERVAQKKLDLMDE- 332
Query: 343 XXLVRDGRLATPGTWRCTTPARGS 414
+RD + A+ WRCT PA S
Sbjct: 333 --FIRDRQPASSRWWRCTPPAPSS 354
>05_04_0284 -
19813179-19813340,19813464-19813748,19813850-19814131,
19814224-19814531,19814654-19814927,19815807-19816175,
19816372-19816434,19817495-19817789,19817818-19818008,
19818123-19818428,19818516-19818638
Length = 885
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 380 PGVASLPSRTSYELVVGGVDGRYRHDAVLSVCDGRVLAQ-RHQVTHRLAG 234
P AS EL+ GG + H + V DGRVL + RH VT ++ G
Sbjct: 408 PAAASSTVHAMSELIAGGGVLCHPHFTLELVADGRVLHRLRHGVTKQIGG 457
>03_04_0193 + 18344984-18345946
Length = 320
Score = 29.5 bits (63), Expect = 2.0
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Frame = -1
Query: 286 ATVASSRNGTR*PTDSLGRVSLFSDSNCCREKTGAAGNSSENIATSSSFSVAFNCIAGQE 107
AT ASS +G +DS S S S+C T SS+ S+ S A + A
Sbjct: 90 ATTASSASGFSSRSDSRSASSSSSSSSCVSRSTSQKSASSDTAGRSNQPSKAASSDALLP 149
Query: 106 PSR---VASLFTARSTSSVSQSGAAADG 32
P R SLF A + S S + G
Sbjct: 150 PRRRPLSGSLFYAHPSPSPRPSQRLSGG 177
>02_05_0740 -
31404004-31404180,31404365-31405261,31405351-31405978,
31405997-31406468,31406575-31407052
Length = 883
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +3
Query: 63 EDVDRAVN-KLATRLGSWPAIQLKATEKDEEVAIFSLLLPAAPVFSLQQLLSENNETLPS 239
ED R++ LA+RL S PA ++++D++ + S +A V S ++L+ N TLP+
Sbjct: 789 EDTLRSLRASLASRLKSQPA---SSSQQDKDSSTPS---SSAQVNSNRKLVIRRNNTLPT 842
Query: 240 ESVGHL 257
+V HL
Sbjct: 843 RNVKHL 848
>04_03_0866 +
20407242-20407575,20407665-20407724,20408298-20408351,
20408465-20408637,20408779-20408965,20409098-20409243,
20409316-20409470,20409888-20409969,20410073-20410188,
20410996-20411091,20411549-20411672,20412252-20412325,
20412820-20413068,20413527-20413738,20414170-20414381
Length = 757
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +1
Query: 184 HRSSLCNSCYLKIMKLCPASLWVTWCRCARTRPSHTDSTASCRY 315
H C+SCY LCP W +W + + AS RY
Sbjct: 48 HLLPRCDSCYAYFSTLCPLHRW-SWSCAICSADNDLTPDASARY 90
>07_03_0394 - 17633753-17636788
Length = 1011
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 460 VSELGTEGSAVRLARRSPAPGLYTATYPVWPAFHLAQAMSLLSVEL 323
V ++G A+R S L+T + P+ P H AQ +S++ E+
Sbjct: 719 VKKMGELHLAIRFTATSLLNVLFTYSRPLLPKMHYAQPLSIVQQEM 764
>03_06_0604 - 35006004-35008580
Length = 858
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 349 LVRDGRLATPGTWRCTTPARGSGAPTSRRS 438
++R RL T G +R + ARGS APT + S
Sbjct: 244 MLRFVRLDTDGNFRAYSAARGSNAPTEQWS 273
>02_01_0788 - 5912821-5913392,5913453-5913953,5914030-5914117
Length = 386
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 285 AHGQYSVMPISTVNSTDNKLIACARWKAGHTGY-VAVYNPGAGE 413
A GQ++V+P+ T+ S++ W A + V ++NPG E
Sbjct: 130 ASGQWAVLPMQTMYSSNGWDSYAWAWDAAADAFDVVIHNPGVTE 173
>01_07_0074 -
40894916-40895754,40896322-40896691,40897239-40897291,
40897456-40897593,40897646-40897716,40898655-40898900,
40899205-40899386,40899494-40899697
Length = 700
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 455 RARH*GERREVGAPLPRAGVVHRHVPGVASL 363
RAR ER + GAP PR + H+ GV ++
Sbjct: 211 RARRGAERGDPGAPFPRPAIRHQQGIGVYNI 241
>10_01_0290 + 2999775-2999928,3000281-3000816
Length = 229
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 129 KATEKDEEVAIFSLLLPAAPVFS--LQQLLSENNETLPSESVGHLVPLREDATVA 287
KA K + FS+ L A S + QL S NNE P + +VP+ E VA
Sbjct: 69 KAAGKLDGTGAFSVPLDADLDSSDCIAQLHSANNEPCPGQEPSKIVPMSEGTFVA 123
>08_01_0049 - 346200-347213
Length = 337
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 78 AVNKLATRLGS-WPAIQLKATEKDEEVAIFSLLLPAAPVFSLQQLLSENNETLPSESVGH 254
A +L RL W A+ L + +FSLL AA VFS+ + S ++ L V
Sbjct: 76 AQRRLLHRLADDWLALLLFKAAYLLALLLFSLLSTAAAVFSVASVYSAKHDALSFPRVLS 135
Query: 255 LVP 263
+VP
Sbjct: 136 VVP 138
>02_04_0059 + 19342457-19342852
Length = 131
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 285 AHGQYSVMPISTVNSTDNKLIACARWKAGHTGY-VAVYNPGAGE 413
A GQ++V+P+ T+ S++ W A + V ++NPG E
Sbjct: 53 ASGQWAVLPMQTMYSSNGWDSYAWTWDAAANVFDVVIHNPGVTE 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,155,090
Number of Sequences: 37544
Number of extensions: 375055
Number of successful extensions: 1534
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1533
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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