Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_K14
(577 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF478687-1|AAL78657.1| 776|Caenorhabditis elegans systemic RNAi... 31 0.78
AF101305-9|AAF98593.3| 776|Caenorhabditis elegans Systemic rna ... 31 0.78
U10438-16|AAO61447.1| 977|Caenorhabditis elegans Glutamate rece... 30 1.0
U10438-15|AAA19090.3| 908|Caenorhabditis elegans Glutamate rece... 30 1.0
AF318606-1|AAK01094.2| 977|Caenorhabditis elegans non-NMDA iono... 30 1.0
Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z47357-9|CAI46580.1| 563|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z47357-8|CAA87425.3| 601|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z35663-6|CAD82917.1| 606|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical pr... 28 5.5
U39849-11|AAA81053.1| 151|Caenorhabditis elegans Hypothetical p... 28 5.5
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ... 28 5.5
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ... 28 5.5
Z92797-1|CAB07234.1| 552|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z29121-6|CAH19096.1| 405|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z29121-5|CAD54174.2| 403|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z22180-12|CAH19086.1| 405|Caenorhabditis elegans Hypothetical p... 27 7.2
Z22180-11|CAD54147.2| 403|Caenorhabditis elegans Hypothetical p... 27 7.2
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati... 27 7.2
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 27 9.5
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 27 9.5
AF003148-5|AAB54209.3| 792|Caenorhabditis elegans Hypothetical ... 27 9.5
>AF478687-1|AAL78657.1| 776|Caenorhabditis elegans systemic RNAi
enabling proteinSID-1 protein.
Length = 776
Score = 30.7 bits (66), Expect = 0.78
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +3
Query: 174 LPAAPVFSLQQLLSENNETLPSESVGHL---VPLREDATVAHGQYSVMPISTV 323
+PAA ++++ +EN ET E + +PL++D+ HGQ P++ +
Sbjct: 386 IPAAENQIVEEITAENQETSVEEGNREIQVKIPLKQDSLSLHGQMLQYPVAII 438
>AF101305-9|AAF98593.3| 776|Caenorhabditis elegans Systemic rna
interference defectiveprotein 1 protein.
Length = 776
Score = 30.7 bits (66), Expect = 0.78
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +3
Query: 174 LPAAPVFSLQQLLSENNETLPSESVGHL---VPLREDATVAHGQYSVMPISTV 323
+PAA ++++ +EN ET E + +PL++D+ HGQ P++ +
Sbjct: 386 IPAAENQIVEEITAENQETSVEEGNREIQVKIPLKQDSLSLHGQMLQYPVAII 438
>U10438-16|AAO61447.1| 977|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 2, isoform b protein.
Length = 977
Score = 30.3 bits (65), Expect = 1.0
Identities = 24/89 (26%), Positives = 41/89 (46%)
Frame = +3
Query: 39 AAAPLWLTEDVDRAVNKLATRLGSWPAIQLKATEKDEEVAIFSLLLPAAPVFSLQQLLSE 218
A APL +T++ +RAV+ + + +I +K EK +E IFS + P + L S
Sbjct: 572 AVAPLTITQERERAVDFSKPFMTTGISIMIKKPEK-QEFNIFSFMEPLGMTIWIFTLSSY 630
Query: 219 NNETLPSESVGHLVPLREDATVAHGQYSV 305
+L V P + G+++V
Sbjct: 631 FGVSLTIFLVSWFSPYEKRIEFKRGEFTV 659
>U10438-15|AAA19090.3| 908|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 2, isoform a protein.
Length = 908
Score = 30.3 bits (65), Expect = 1.0
Identities = 24/89 (26%), Positives = 41/89 (46%)
Frame = +3
Query: 39 AAAPLWLTEDVDRAVNKLATRLGSWPAIQLKATEKDEEVAIFSLLLPAAPVFSLQQLLSE 218
A APL +T++ +RAV+ + + +I +K EK +E IFS + P + L S
Sbjct: 503 AVAPLTITQERERAVDFSKPFMTTGISIMIKKPEK-QEFNIFSFMEPLGMTIWIFTLSSY 561
Query: 219 NNETLPSESVGHLVPLREDATVAHGQYSV 305
+L V P + G+++V
Sbjct: 562 FGVSLTIFLVSWFSPYEKRIEFKRGEFTV 590
>AF318606-1|AAK01094.2| 977|Caenorhabditis elegans non-NMDA
ionotropic glutamate receptorsubunit GLR-2 protein.
Length = 977
Score = 30.3 bits (65), Expect = 1.0
Identities = 24/89 (26%), Positives = 41/89 (46%)
Frame = +3
Query: 39 AAAPLWLTEDVDRAVNKLATRLGSWPAIQLKATEKDEEVAIFSLLLPAAPVFSLQQLLSE 218
A APL +T++ +RAV+ + + +I +K EK +E IFS + P + L S
Sbjct: 572 AVAPLTITQERERAVDFSKPFMTTGISIMIKKPEK-QEFNIFSFMEPLGMTIWIFTLSSY 630
Query: 219 NNETLPSESVGHLVPLREDATVAHGQYSV 305
+L V P + G+++V
Sbjct: 631 FGVSLTIFLVSWFSPYEKRIEFKRGEFTV 659
>Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -1
Query: 397 LYTATYPVWPAFHLAQ 350
LYT YP+ PAFH AQ
Sbjct: 50 LYTFPYPIAPAFHQAQ 65
>Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical
protein T23B5.3b protein.
Length = 540
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -1
Query: 397 LYTATYPVWPAFHLAQ 350
LYT YP+ PAFH AQ
Sbjct: 50 LYTFPYPIAPAFHQAQ 65
>Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -1
Query: 397 LYTATYPVWPAFHLAQ 350
LYT YP+ PAFH AQ
Sbjct: 50 LYTFPYPIAPAFHQAQ 65
>Z47357-9|CAI46580.1| 563|Caenorhabditis elegans Hypothetical
protein ZK1128.6b protein.
Length = 563
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 426 LTALPSVPSSLTVHHVSRAVKHYTNYTNNYPEHADNV 536
L SVP S +V +S H TNY+ N AD V
Sbjct: 281 LVRFASVPYSHSVSTISNKYMHLTNYSINKLAEADGV 317
>Z47357-8|CAA87425.3| 601|Caenorhabditis elegans Hypothetical
protein ZK1128.6a protein.
Length = 601
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 426 LTALPSVPSSLTVHHVSRAVKHYTNYTNNYPEHADNV 536
L SVP S +V +S H TNY+ N AD V
Sbjct: 319 LVRFASVPYSHSVSTISNKYMHLTNYSINKLAEADGV 355
>Z35663-6|CAD82917.1| 606|Caenorhabditis elegans Hypothetical
protein T04A8.7b protein.
Length = 606
Score = 27.9 bits (59), Expect = 5.5
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Frame = +3
Query: 258 VPLREDAT--VAHGQYSVMPISTVNSTDNKL------IACARWKAGHTGYVAVYNPGAGE 413
VP +ED + + H + +S +T KL + C K + +NP E
Sbjct: 31 VPAKEDGSCPIPHNSVIKIAVSRHGATHFKLSPWATFVTCPNPKETVIYHQNFWNPP--E 88
Query: 414 RRANLTALPSVPSSLTVHHVSRAVKHYTNYTNNYPEHADNVL 539
+ A P+ P+SL ++ + N Y E AD+VL
Sbjct: 89 KYQLKEARPARPASLRIYEAHVGISSSEGKINTYREFADDVL 130
>Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical
protein T04A8.7a protein.
Length = 681
Score = 27.9 bits (59), Expect = 5.5
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Frame = +3
Query: 258 VPLREDAT--VAHGQYSVMPISTVNSTDNKL------IACARWKAGHTGYVAVYNPGAGE 413
VP +ED + + H + +S +T KL + C K + +NP E
Sbjct: 106 VPAKEDGSCPIPHNSVIKIAVSRHGATHFKLSPWATFVTCPNPKETVIYHQNFWNPP--E 163
Query: 414 RRANLTALPSVPSSLTVHHVSRAVKHYTNYTNNYPEHADNVL 539
+ A P+ P+SL ++ + N Y E AD+VL
Sbjct: 164 KYQLKEARPARPASLRIYEAHVGISSSEGKINTYREFADDVL 205
>U39849-11|AAA81053.1| 151|Caenorhabditis elegans Hypothetical
protein C06A8.3 protein.
Length = 151
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +3
Query: 363 KAGHTGYVAVYNPGAGERRANLTALPSVPSSLTVHHVSRAVKHYTN 500
+A H V+ ++P A + A+LTA+ S SSL+V + ++ Y N
Sbjct: 91 EAAHQAAVSNFSPAAKKADADLTAI-SNDSSLSVQAKGQKIQAYLN 135
>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
protein C36B7.5b protein.
Length = 1148
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 202 NSCYLKIMKLCPASLWVTWCRCARTRP 282
N+C + K C S W WC C R RP
Sbjct: 806 NACQDPVGK-CEWSEWGEWCGCMRCRP 831
>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
protein C36B7.5a protein.
Length = 1121
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 202 NSCYLKIMKLCPASLWVTWCRCARTRP 282
N+C + K C S W WC C R RP
Sbjct: 806 NACQDPVGK-CEWSEWGEWCGCMRCRP 831
>Z92797-1|CAB07234.1| 552|Caenorhabditis elegans Hypothetical
protein H25P06.1 protein.
Length = 552
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +3
Query: 255 LVPLREDATVAHGQYSVMPISTVNSTDNKLIACARWKAGHTGYVAVYNPG 404
+V L EDA G+ V ++ +N T ++A A GH + G
Sbjct: 207 VVQLLEDAIARDGRVKVNIVALINDTVGTMVAAAYEAGGHCDIGVIIGTG 256
>Z29121-6|CAH19096.1| 405|Caenorhabditis elegans Hypothetical
protein ZK757.4b protein.
Length = 405
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Frame = +1
Query: 169 CCY---RLHRSSLCNSCYLKIMKLCPASLWVTWC 261
CC R H S+C C LK CP WV C
Sbjct: 140 CCIKPDRSHHCSMCEQCVLKFDHHCP---WVNNC 170
>Z29121-5|CAD54174.2| 403|Caenorhabditis elegans Hypothetical
protein ZK757.4a protein.
Length = 403
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Frame = +1
Query: 169 CCY---RLHRSSLCNSCYLKIMKLCPASLWVTWC 261
CC R H S+C C LK CP WV C
Sbjct: 138 CCIKPDRSHHCSMCEQCVLKFDHHCP---WVNNC 168
>Z22180-12|CAH19086.1| 405|Caenorhabditis elegans Hypothetical
protein ZK757.4b protein.
Length = 405
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Frame = +1
Query: 169 CCY---RLHRSSLCNSCYLKIMKLCPASLWVTWC 261
CC R H S+C C LK CP WV C
Sbjct: 140 CCIKPDRSHHCSMCEQCVLKFDHHCP---WVNNC 170
>Z22180-11|CAD54147.2| 403|Caenorhabditis elegans Hypothetical
protein ZK757.4a protein.
Length = 403
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Frame = +1
Query: 169 CCY---RLHRSSLCNSCYLKIMKLCPASLWVTWC 261
CC R H S+C C LK CP WV C
Sbjct: 138 CCIKPDRSHHCSMCEQCVLKFDHHCP---WVNNC 168
>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
protein protein.
Length = 1439
Score = 27.5 bits (58), Expect = 7.2
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Frame = -1
Query: 199 REKTGAAGNSSENIA---TSSSFSVAFNCIAG--QEPSRVAS-LFTARSTSSVSQSGAAA 38
R T G+S+E A TSSS S + G P+ VA +FT STSS+S SG A+
Sbjct: 209 RMGTARVGDSNEATAENGTSSSSSRKNSRDDGLTSSPTTVAGPVFTTSSTSSISTSGEAS 268
>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
protein C04D8.1 protein.
Length = 1317
Score = 27.5 bits (58), Expect = 7.2
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Frame = -1
Query: 199 REKTGAAGNSSENIA---TSSSFSVAFNCIAG--QEPSRVAS-LFTARSTSSVSQSGAAA 38
R T G+S+E A TSSS S + G P+ VA +FT STSS+S SG A+
Sbjct: 87 RMGTARVGDSNEATAENGTSSSSSRKNSRDDGLTSSPTTVAGPVFTTSSTSSISTSGEAS 146
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
F15B9.7 protein.
Length = 2577
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 205 SCYLKIMK-LCPASLWVTWCRCARTRPSHT-DSTASC 309
+C L+ K +CP+ W T+ RC R + T D A C
Sbjct: 1787 NCQLEAPKQMCPSGWWGTFPRCRRCSCAQTKDYEAQC 1823
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 205 SCYLKIMK-LCPASLWVTWCRCARTRPSHT-DSTASC 309
+C L+ K +CP+ W T+ RC R + T D A C
Sbjct: 1787 NCQLEAPKQMCPSGWWGTFPRCRRCSCAQTKDYEAQC 1823
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 205 SCYLKIMK-LCPASLWVTWCRCARTRPSHT-DSTASC 309
+C L+ K +CP+ W T+ RC R + T D A C
Sbjct: 1806 NCQLEAPKQMCPSGWWGTFPRCRRCSCAQTKDYEAQC 1842
>AF003148-5|AAB54209.3| 792|Caenorhabditis elegans Hypothetical
protein F32B5.7 protein.
Length = 792
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 402 GAGERRANLTALPSVPSSLTVHHVSRAVKHYTNYTNNYPEHADNVLVP 545
GA +R+ N S+P + +S AVK Y + +AD L P
Sbjct: 194 GAVQRQRNFNYQVSLPHYTSAKFLSDAVKRYIQFLLLKQTYADQFLTP 241
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,220,896
Number of Sequences: 27780
Number of extensions: 276300
Number of successful extensions: 877
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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