Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K14
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.54 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.54 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.71 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.71 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   1.2  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   2.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   2.2  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   3.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.6  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   6.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.7  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   8.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
 Frame = -1

Query: 139 SVAFNCIAGQEPSRVAS-------LFTARSTSSVSQSGAAADGCSIVTFCLVP 2
           S A+ C+A     RV S       +        V   G A+ GC+ V  C+VP
Sbjct: 103 SAAYRCVASNSVGRVLSRDVQVRAVVAQAYKVDVEVIGGASRGCTAVLRCVVP 155


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
 Frame = -1

Query: 139 SVAFNCIAGQEPSRVAS-------LFTARSTSSVSQSGAAADGCSIVTFCLVP 2
           S A+ C+A     RV S       +        V   G A+ GC+ V  C+VP
Sbjct: 103 SAAYRCVASNSVGRVLSRDVQVRAVVAQAYKVDVEVIGGASRGCTAVLRCVVP 155


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 391 CTTPARGSGAPTSRR 435
           CT P+RG+  P+S+R
Sbjct: 16  CTRPSRGNAVPSSQR 30


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 391 CTTPARGSGAPTSRR 435
           CT P+RG+  P+S+R
Sbjct: 16  CTRPSRGNAVPSSQR 30


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -1

Query: 106 PSRVASLF--TARSTSSVSQSGAAADGCSIVTFCL 8
           P   A LF  +  +TS+   SGA A+ C+   +CL
Sbjct: 116 PKCAAFLFQLSFATTSTTIVSGAMAERCNFKAYCL 150


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 438 PSVPSSLTVHHVSRAVKHYTNYTNNYPEHADN 533
           P + SSL+ ++      +Y NY NNY  + +N
Sbjct: 79  PKIISSLSNNY---KYSNYNNYNNNYNNNYNN 107


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 438 PSVPSSLTVHHVSRAVKHYTNYTNNYPEHADN 533
           P + SSL+ ++      +Y NY NNY  + +N
Sbjct: 79  PKIISSLSNNY---KYSNYNNYNNNYNNNYNN 107


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 438 PSVPSSLTVHHVSRAVKHYTNYTNNYPEHADN 533
           P + SSL+ ++      +Y N  NNY  + +N
Sbjct: 312 PKIISSLSNNYKYSNYNNYNNNYNNYNNYNNN 343


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 438 PSVPSSLTVHHVSRAVKHYTNYTNN 512
           P + SSL+ ++      +Y NY NN
Sbjct: 312 PKIISSLSNNYKYSNYNNYNNYNNN 336


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 567 RARQSTSPAPARCPR 523
           RA  S +P P +CPR
Sbjct: 556 RASLSKTPQPPQCPR 570


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 309 PISTVNSTDNKLIACARWKAGHTGY 383
           PI      D  + A A+W  G TG+
Sbjct: 330 PICVQIPWDKNVEALAKWANGQTGF 354


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 396 NPGAGERRANLTALPSVPSSLTVHHVSRAVKHYTNYTNN 512
           NPG  +      A  S+ SSL+   V+ A  +Y    N+
Sbjct: 23  NPGTIQACTTSPATASLESSLSAAAVAAAAVNYAQQHNS 61


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 145 MKKWQY--SHCCYRLHRSSLCNSCYLKIMKLCPASLWVTWCRCARTRPSHT 291
           + +W Y  + C Y  + S+  N     +M     + +   CRC+ + PS T
Sbjct: 293 INQWVYPLTGCLY--YFSTTINPILYNVMSAKYRNAFKETCRCSPSNPSIT 341


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 13/49 (26%), Positives = 19/49 (38%)
 Frame = +3

Query: 393 YNPGAGERRANLTALPSVPSSLTVHHVSRAVKHYTNYTNNYPEHADNVL 539
           Y   + ER  N T          +  +S    +Y NY NNY     N++
Sbjct: 292 YGETSKERSRNRTEREKSKEPKIISSLSNNY-NYNNYNNNYKPLYYNII 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,870
Number of Sequences: 438
Number of extensions: 3107
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)