Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K12
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...   211   8e-56
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...   209   2e-55
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...   204   1e-53
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    29   0.77 
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   1.8  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    27   2.4  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   4.1  
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...    25   7.2  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score =  211 bits (515), Expect = 8e-56
 Identities = 100/191 (52%), Positives = 132/191 (69%)
 Frame = +1

Query: 82  SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERD 261
           SK+    PES+                   ++++A  KKR+ I KRAE Y  EYR  ER+
Sbjct: 10  SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69

Query: 262 EIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNK 441
           +I L R+AR  GNYYVP E KL FVIRIRG+N + PK RK++QL RL QINNGVFV+ NK
Sbjct: 70  QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNK 129

Query: 442 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICV 621
           AT  ML++ EPY+ +G PNLK+VREL+YKRGF K+N +R+ ++ N++IE  L K +I+ +
Sbjct: 130 ATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSI 189

Query: 622 EDLIHEIFTVG 654
           EDLIHEI+TVG
Sbjct: 190 EDLIHEIYTVG 200


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score =  209 bits (511), Expect = 2e-55
 Identities = 97/184 (52%), Positives = 129/184 (70%)
 Frame = +1

Query: 103 PESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQ 282
           PES+                   +++SA  KKR+ I KRAE Y  EYR  ER++I LAR+
Sbjct: 16  PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75

Query: 283 ARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 462
           AR  GNY+VP E KL FV+RIRG+N + PK RK++QL RL QINNG+FV+ NKA   ML+
Sbjct: 76  ARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQ 135

Query: 463 IAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEI 642
           + EPY+ +G PN K+VREL+YKRGF K+N +R+P++ N++IE  L K +I+ VEDLIHEI
Sbjct: 136 VVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEI 195

Query: 643 FTVG 654
           +TVG
Sbjct: 196 YTVG 199


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score =  204 bits (497), Expect = 1e-53
 Identities = 92/162 (56%), Positives = 122/162 (75%)
 Frame = +1

Query: 169 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 348
           + ++ A  K RKE FKRAE ++  YR +ER+ IRL R A+N+G+ +VP E KL FVIRI 
Sbjct: 37  IAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIA 96

Query: 349 GVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYK 528
           GV  + PK+RKVL+L RL +INN VFVR NKA   MLRI EPY+ +G PNL SVREL+YK
Sbjct: 97  GVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYK 156

Query: 529 RGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVG 654
           RGF K+NG+R+ ++ N+LIE+ L K ++I +ED+IHEI+ VG
Sbjct: 157 RGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVG 198


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +1

Query: 187 SIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 300
           S+K+ +EI ++ E+    +R+K ++  ++ + A N GN
Sbjct: 152 SLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +1

Query: 283  ARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRL 402
            + N+G YY  G   +AFV  I GV + SP++   LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 493 PNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNII 615
           P LK+ REL+ K+   +     V   SN ++EK L   +II
Sbjct: 423 PKLKAERELLSKQESMEKQSMHVDEESNQILEKFLDVYDII 463


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 217 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 318
           +A Q   ++ +     +RL     N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 178 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARN 291
           R  S K ++E  +R +QYV E    E+D+I + +  ++
Sbjct: 67  RGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKD 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,216
Number of Sequences: 5004
Number of extensions: 51132
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)