Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_K12
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 220 7e-58
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 214 6e-56
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 136 1e-32
02_05_0756 - 31534011-31534141,31534235-31535338,31535448-315356... 31 0.61
09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468 29 3.2
11_01_0049 - 375049-375342,375596-375660,375907-375956,376492-37... 29 4.3
10_08_0139 + 15145310-15145622,15145820-15145881,15145975-151463... 28 7.5
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155... 27 9.9
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 220 bits (538), Expect = 7e-58
Identities = 101/189 (53%), Positives = 137/189 (72%)
Frame = +1
Query: 88 KLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEI 267
K VPESV + L + +++ RK IF RA+QY +EY +E++ +
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66
Query: 268 RLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKAT 447
+L R+AR +G +YV EAKL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT
Sbjct: 67 QLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKAT 126
Query: 448 VNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVED 627
+NMLR EPY+A+GYPNLKSVREL+YKRG+ KLN +R+P+ +N +IE+ L K +IIC+ED
Sbjct: 127 INMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIED 186
Query: 628 LIHEIFTVG 654
L+HEI TVG
Sbjct: 187 LVHEIMTVG 195
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 214 bits (522), Expect = 6e-56
Identities = 101/191 (52%), Positives = 136/191 (71%), Gaps = 6/191 (3%)
Frame = +1
Query: 100 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 279
VPESV + + + SI+ RK IF RA+QY +EY +E++ ++L R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
Query: 280 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 459
+AR +G +YV E KL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70 EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 129
Query: 460 RIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKR------LSKQNIICV 621
R EPY+A+GYPNLKSVREL+YKRG+ KLN +R+P+T+N +IE+ L K +IIC+
Sbjct: 130 RRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICI 189
Query: 622 EDLIHEIFTVG 654
EDL+HEI TVG
Sbjct: 190 EDLVHEIMTVG 200
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 136 bits (330), Expect = 1e-32
Identities = 74/197 (37%), Positives = 114/197 (57%), Gaps = 3/197 (1%)
Frame = +1
Query: 73 KEDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIK 252
+E +++LP V E+V + +R K KR E +V+E+R K
Sbjct: 3 EEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNK 62
Query: 253 ERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGV 423
E D +R+ + + R P E +KL F IRI G + P +R++L+ RL Q+ GV
Sbjct: 63 ELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGV 120
Query: 424 FVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSK 603
F++ AT+ L + EP+I +G+PNLK+V++L+YK+G L+ + P+TSN LIEK L +
Sbjct: 121 FLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGE 180
Query: 604 QNIICVEDLIHEIFTVG 654
IIC+EDL+HEI +VG
Sbjct: 181 YGIICLEDLVHEIASVG 197
>02_05_0756 -
31534011-31534141,31534235-31535338,31535448-31535692,
31535789-31535940,31536051-31536158
Length = 579
Score = 31.5 bits (68), Expect = 0.61
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -1
Query: 354 DTTNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFP 199
D TN +KC G+ A++ ++S QS I +LDA ++ G ++ FP
Sbjct: 382 DPTNMAEKCKEGPQGNRFAASLNNVSFQSPAIDVLDAYYYSSGHGVYEEDFP 433
>09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468
Length = 1078
Score = 29.1 bits (62), Expect = 3.2
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Frame = +1
Query: 313 GEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGY 492
G+ K I +RG + ++ + +L +LR ++ ++N R+ + WG+
Sbjct: 621 GKMKFLEHIGLRGCHSLAELPSSITELPKLRHLSIDE-TKINAIPRGFKRLENLEMLWGF 679
Query: 493 P-------------NLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVE 624
P +L+ + L R + + VP +S + + K +K+N+IC+E
Sbjct: 680 PVHIIIENTGEYRCSLEELGPLSKLRKLKLIGLENVPYSSMATLAKLKTKENLICLE 736
>11_01_0049 -
375049-375342,375596-375660,375907-375956,376492-376541
Length = 152
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 194 RRGKKSLREPNNMSKNTASRSVMKSDWQDRLVTVA 298
R+G KS+ P N K+ R +M S+ + L TVA
Sbjct: 108 RKGTKSIDHPCNTIKSMGDRGLMSSESRRMLYTVA 142
>10_08_0139 +
15145310-15145622,15145820-15145881,15145975-15146355,
15146413-15146929,15147031-15147161
Length = 467
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -1
Query: 354 DTTNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFP 199
DTTN +K G+ A++ ++S +S I +LDA ++ G ++ FP
Sbjct: 269 DTTNATNKLCKGPQGNQFAASLNNVSFESPAIDVLDAYYYGSGRGVYEEDFP 320
>03_05_1068 +
30114682-30114868,30114947-30115239,30115354-30115591,
30115977-30117871
Length = 870
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -2
Query: 599 LSLFSMSELEVIGTRFPFSLAKPRLYTNSRTLFKLG*PHAI 477
L L S+ LE + RFP L K + L KL PH I
Sbjct: 310 LKLPSIPALEELRKRFPLQLVKDLIPAGGDYLLKLPMPHVI 350
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,273,994
Number of Sequences: 37544
Number of extensions: 347806
Number of successful extensions: 967
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -