Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_K10
(558 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy... 30 0.20
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 30 0.27
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 26 4.3
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 26 4.3
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 26 4.3
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 25 5.7
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 7.5
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 7.5
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 7.5
>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 30.3 bits (65), Expect = 0.20
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = -3
Query: 280 ASSMSAANGSIRSSNGRNLSSNICSGFNSVELSLSRALK 164
++ + +A G+IR G +L N+C G +S+E S +R +K
Sbjct: 93 SNPLDSAPGTIRGDYGIDLGRNVCHGSDSIE-SANREIK 130
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 29.9 bits (64), Expect = 0.27
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 99 SDTFNSALKTYDRHFSLTEHFLFKALDRLSSTELKPEQILLDKLRP 236
S +F+ AL +++H + +HF K+LD S E+ E KL+P
Sbjct: 572 SRSFSHALNVFEKHLNTLKHFSRKSLD--SEIEVVDELFSFWKLQP 615
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/51 (23%), Positives = 27/51 (52%)
Frame = -3
Query: 238 NGRNLSSNICSGFNSVELSLSRALKRKCSVKLKCLSYVFKALLKVSELVLR 86
N S ++ G + E+ + + +KR LKC+S ++ L+++ +L+
Sbjct: 408 NSSGPSPSLFMGTAAFEVIVKQQIKRLEDPSLKCVSLIYDELVRILNQLLQ 458
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 336 IIIIC*DDLYLMHANVESIYKTMQ 407
+I+ C DD YL+ N E Y ++
Sbjct: 477 VILACDDDFYLLGFNAEMFYSAVE 500
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 4.3
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = +3
Query: 54 DGNFLVRNENTLKTNSDTFNSALKTYDRHF--SLTEHFLFKALDRLSSTELKPEQILLDK 227
DG+FLV+ E T K + + Y+R S K L+ LSS+ +K +L
Sbjct: 228 DGDFLVKKEKTKKQLEEEEHG----YERFLLESAQSKEARKVLEDLSSSYVKQRPSVLVN 283
Query: 228 LRPLEDRILPLAADMLL 278
E+ I P D LL
Sbjct: 284 TEDDENGIKPSDEDFLL 300
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 301 KLTGSTPASSMSAANGSIRSSNGR 230
++TGS S +S A GSIR S GR
Sbjct: 492 EVTGSIITSFLSRAFGSIRYSGGR 515
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 7.5
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
Frame = +3
Query: 6 RSTPAERLVRCSKDIADG--NFLVRNENTLKTNSDTFNSALKTYDRHFSLTEHFLFKALD 179
+S RL + +DI + N L+R E + + D ++ + T+ L K
Sbjct: 501 QSIELTRLYKQLQDIEEDYENKLMRMEQQWREDVDQLQEYVEEITQELQDTKEVLSK--- 557
Query: 180 RLSSTELKPEQILLDKLRPLEDRILPLAADMLLAGVEPVSFYKYFIEKYTSVI 338
SS E + ++ KLR +R + + E +S +K +EK T I
Sbjct: 558 --SSKESDDYEEVVGKLRTEAEREIEKFEKTIRENEESISLFKEEVEKLTDEI 608
>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 288
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 84 TLKTNSDTFNSALKTYDRHFSLTEHFLFKALDRLSS 191
T+ + D F SA + HF+ TE F A ++ S
Sbjct: 137 TVTSPKDAFVSAFEENKFHFAATESFFEMAFSKIDS 172
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 298 LTGSTPASSMSAANGSIRSSNGRNLSSN 215
+ S SS+S +GSI S N LSS+
Sbjct: 81 IVSSLALSSISGKDGSISSQNAEGLSSS 108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,908,338
Number of Sequences: 5004
Number of extensions: 32719
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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