Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K10
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0450 - 17847676-17847841,17848024-17848131,17848223-178483...    33   0.20 
08_02_1017 - 23616244-23616381,23616471-23616537,23617160-236172...    29   2.5  
06_01_0438 + 3110703-3111945,3112486-3113057                           28   4.4  
05_03_0213 + 10303870-10303999,10304181-10304367,10305352-103054...    28   5.8  
12_02_0289 - 16914975-16916238,16916246-16916484                       27   7.7  

>11_04_0450 -
           17847676-17847841,17848024-17848131,17848223-17848377,
           17848471-17848560,17848650-17848748,17848862-17848928,
           17849028-17849124,17849357-17849492,17849579-17849634,
           17849718-17849801,17849909-17850125
          Length = 424

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +3

Query: 216 LLDKLRPLEDRILPLAADMLLAGVEPVSFYKYFIEKYTSVII 341
           L+D+L    DR++ L+ D+  A V  VS  ++ +E+Y  V++
Sbjct: 54  LVDRLSKFRDRVVALSEDIYCADVSDVSELQHALEEYLPVVL 95


>08_02_1017 -
           23616244-23616381,23616471-23616537,23617160-23617238,
           23617330-23617486,23617581-23617719,23617820-23617872,
           23618037-23618120,23618291-23618359,23618488-23618553,
           23618657-23618800,23619331-23619414,23619498-23619596,
           23620097-23620219,23620745-23621290
          Length = 615

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 183 LSSTELKPEQILLDKLRPLEDRILPLAADMLLAGVEPVS 299
           L +  L P   L DK+    +RIL  A+D++ A + P S
Sbjct: 149 LRNPALAPNSFLRDKIETTLERILAFASDVISAKIRPPS 187


>06_01_0438 + 3110703-3111945,3112486-3113057
          Length = 604

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 63  FLVRNENTLKTNSDTFNSALKTYDRH-FSLTEHFLFKALDRLSSTELKPEQILLDKLRP 236
           FLV+N      +SDT  S++K  D H F L E+ +  +L  L      P  +L  +  P
Sbjct: 354 FLVQNSIIFSVSSDTTTSSIKVGDHHKFLLNENEITPSLFLLPWLVHDPADLLPQETPP 412


>05_03_0213 +
           10303870-10303999,10304181-10304367,10305352-10305423,
           10305722-10305793,10306059-10306130,10306435-10306518,
           10306765-10306839,10307098-10307206
          Length = 266

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 22/75 (29%), Positives = 35/75 (46%)
 Frame = -3

Query: 229 NLSSNICSGFNSVELSLSRALKRKCSVKLKCLSYVFKALLKVSELVLRVFSLRTKKLPSA 50
           N+S  +CSGF S E+           +K  C S+    L  +++L L   SL + +LP  
Sbjct: 63  NISGELCSGFASTEIDWDYYPTINPFIKCDC-SFSNNTLCHITKLALASNSL-SGQLPKE 120

Query: 49  MSFEQRTSLSAGVDL 5
           +       LS G++L
Sbjct: 121 LG-NLTNLLSLGINL 134


>12_02_0289 - 16914975-16916238,16916246-16916484
          Length = 500

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 138 HFSLTEHFLFKALD-RLSSTELKPEQILLDKLRPLEDRILPL 260
           + ++TEH LF  ++  LS T   P  +  DKL P    I PL
Sbjct: 398 YLNITEHSLFSEIEGLLSETNTTPADV-ADKLMPRNGEIGPL 438


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,401,276
Number of Sequences: 37544
Number of extensions: 178991
Number of successful extensions: 437
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)