Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_K09
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 119 3e-28
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 53 4e-08
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 39 5e-04
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 37 0.002
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 30 0.22
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 30 0.22
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 30 0.22
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 30 0.29
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 29 0.39
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 29 0.39
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 29 0.51
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 29 0.68
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 28 1.2
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 28 1.2
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 27 1.6
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 27 1.6
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 27 2.1
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 27 2.1
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 27 2.1
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 27 2.7
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 27 2.7
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 26 3.6
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 26 3.6
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 26 3.6
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 26 4.8
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 25 6.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 6.3
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 25 6.3
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch... 25 6.3
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 25 6.3
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 8.3
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 8.3
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 119 bits (287), Expect = 3e-28
Identities = 68/163 (41%), Positives = 92/163 (56%), Gaps = 6/163 (3%)
Frame = +2
Query: 116 LYHDDTLQTFYRRLQFSPDGALVAVPAGRAEADQGKADVKPINAVYIYTRYSL-KIP-AC 289
LY ++TL +F+RR FSPDG L+ PAGR G+ + + YIYTR S+ K P AC
Sbjct: 293 LYCNETLVSFFRRPAFSPDGLLLVTPAGRLRP-HGQPNFEVPYTAYIYTRGSITKQPVAC 351
Query: 290 ILPCGDSALVTRWSPRQYRVRPGG----PRAAFPTRSRMVLAVGTRRSVLIYDTQQKTPI 457
+ + R+SP Y + +F RMV AV + +V IYDTQ P
Sbjct: 352 LNGFKKPVIAVRFSPIHYELNSFSNFSFTSVSFNLPYRMVFAVACQDAVYIYDTQTCKPF 411
Query: 458 AIISNIHYTRLTDLTWSPDGNTLIASSTDGFCTIITFANGELG 586
N+HY+ LTD+ W+ DGN L+ +S DGFC++ITF GELG
Sbjct: 412 YRAVNLHYSNLTDIAWNDDGNVLLMTSIDGFCSVITFEPGELG 454
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 455 IAIISNIHYTRLTDLTWSPDGNTLIASSTDGFCTIITFANGEL 583
+ I+ + + DL WS D N LIA + D + G+L
Sbjct: 120 VKIVCRSMGSEIYDLCWSVDSNFLIAGAMDNSLRLYDAHTGQL 162
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 52.8 bits (121), Expect = 4e-08
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 1/160 (0%)
Frame = +2
Query: 119 YHDDTLQTFYRRLQFSPDGALVAVPAGRAEADQGKADVKPINAVYIYTRYSLKIPACILP 298
+++ L T++RR +SPDG +A P A G P++ V I R + ++
Sbjct: 218 FNNSPLSTYFRRPSWSPDGKHIAAP----NAMNG-----PVSCVSIIERGTWTSEINLIG 268
Query: 299 CGDSALVTRWSPRQYRVRPGGPRAAFPTRSRMVLAVGTR-RSVLIYDTQQKTPIAIISNI 475
VT ++P+ +R + + +LA G + RS+ I+ + P+ N+
Sbjct: 269 HEGPVEVTAFNPKLFRDKND--------KLVCILACGGQDRSLSIWSSALPRPLLSCQNV 320
Query: 476 HYTRLTDLTWSPDGNTLIASSTDGFCTIITFANGELGEVL 595
+ D+ WSPDG +L S DG + TF E G+++
Sbjct: 321 FQKSIGDVCWSPDGLSLFLCSYDGNVLVCTFEKEEFGDMV 360
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 39.1 bits (87), Expect = 5e-04
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +2
Query: 377 PTRSRMVLAVGTRRSVLIYDTQQKTPIAIISNIHYTRLTDLTWSPDGNTLIASSTDGFCT 556
P + ++ + V I++T P+A+I + + DL WS G L S DG
Sbjct: 294 PFQKSIIASAAHDGCVSIWNTACARPMAVIHELSCSSFVDLQWSTSGFELYGVSLDGNLM 353
Query: 557 IITFANGELGE 589
++ F E GE
Sbjct: 354 LLQFEESEFGE 364
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 37.1 bits (82), Expect = 0.002
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = +2
Query: 377 PTRSRMVLAVGTRRSVLIYDTQQKTPIAIISNIHYTRLTDLTWSPDGNTLIASSTDGFCT 556
PT S ++AV + + +D + PIA I + +Y + TWSP GN ASS D +
Sbjct: 79 PTHSDRLMAVYAGKMIRFWDFRSAKPIAEIES-NYENIY-ATWSPSGNYCCASSRDDMLS 136
Query: 557 II 562
I
Sbjct: 137 FI 138
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 30.3 bits (65), Expect = 0.22
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 398 LAVGTRRSVLIYDTQQKTPIAIISNIHYTRLTDLTWSPDGNTLIASSTDG 547
LA GT + L + + + HY LT L +S DG L +S DG
Sbjct: 91 LAAGTEKGNLYIWSLKSGALIYFFRAHYQPLTILKFSNDGMVLFTASNDG 140
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 30.3 bits (65), Expect = 0.22
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Frame = +2
Query: 377 PTRSRMVLAVGTRRSVLIYDTQQKTPIAIISNIHYTRLTD------LTWSPDGNTLIASS 538
P R + A G+ + +TQ+K + + + + LTWSPDG TL +
Sbjct: 243 PNRYWLCAATGSSIRIFDLETQEKVDELTVDFVGVGKKSSEPECISLTWSPDGQTLFSGW 302
Query: 539 TDGFCTI 559
TD +
Sbjct: 303 TDNLIRV 309
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 30.3 bits (65), Expect = 0.22
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +2
Query: 398 LAVGTRRSVLIYDTQQKTPIAIISNIHYTRLTDLTWSPDGNTLIASSTDGFCTIITF 568
LA+ + R L K + + + ++ LT +TWSPDG + D +I +F
Sbjct: 337 LALVSERGTLKLFDFVKEHVLDVFHSYFAGLTCVTWSPDGKFIAIGGKDDLVSIYSF 393
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 29.9 bits (64), Expect = 0.29
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 380 TRSRMVLAVGTRRSVLIYDTQQKTPIAIISNIHYTRLTDLTWSP-DGNTLIASSTD 544
T + ++ + G RS++IYD + +P+ + I R ++W+P + +A S D
Sbjct: 198 TETSVLASAGMDRSIVIYDLRTSSPLTKL--ITKLRTNSISWNPMEAFNFVAGSED 251
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 29.5 bits (63), Expect = 0.39
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 470 NIHYTRLTDLTWSPDGNTLIASSTDGFCTIITFANGELGE 589
+ H T+L W+ DGN ++ +G II + G L E
Sbjct: 65 DFHDLEATELCWNHDGNLIVVGFKNGELKIIDSSTGHLVE 104
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 29.5 bits (63), Expect = 0.39
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 221 KADVKPINAVYIYTRYSLKIPACI 292
K +KPI A +YTR+ +P C+
Sbjct: 97 KRILKPIKAARVYTRFCCNVPVCV 120
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 29.1 bits (62), Expect = 0.51
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +2
Query: 425 LIYDTQQKTPIAI-----ISNIHYTRLTDLTWSPDGNTLIASST 541
L +DT++K P A+ I + + +T+L W P G + SST
Sbjct: 546 LDFDTEKKEPDALANVQQIGSAEHFGMTELEWDPSGRYVTTSST 589
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 28.7 bits (61), Expect = 0.68
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +2
Query: 398 LAVGTRR--SVLIYDTQQKTPIAIISNIHYTRLTDLTWSPDGNTLIASSTDG 547
+A+G+ + +L+++ Q ++ + + HY L+ L +S DG +I + DG
Sbjct: 311 IAIGSSKLGQLLVWEWQSESYV-LKQQSHYDALSTLQYSSDGQRIITGADDG 361
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 437 TQQKTPIAIISNIHYTRLTDLTWSPDGNTLIASSTD 544
T + +A I+N H ++ LTW+ DG+ + D
Sbjct: 308 TSKAVLVATITNAHDEQVCGLTWNHDGSQFASGGND 343
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 398 LAVGTR-RSVLIYDTQQKTPIAIISNIHYTRLTDLTWSPDGNTLIASSTD 544
LA G + + I+D QK +++ H + L +S DG TL++ S D
Sbjct: 349 LATGVEDQQIRIWDIAQKRVYRLLTG-HEQEIYSLDFSKDGKTLVSGSGD 397
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 393 WCSPSGPGAPCSFTIHNRRH 452
W P P SF IHNR H
Sbjct: 702 WSGPKRAPTPLSFDIHNREH 721
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Frame = +2
Query: 464 ISNIHYTRLTDLT--------WSPDGNTLIASSTDGFCTIITFANGELGE 589
IS H +LTD+ + DG TL S+ +G+ + F NG++ E
Sbjct: 557 ISLTHSLKLTDIPRSIVYSQKYGDDGGTLYVSTNNGYVLMFNFQNGQVIE 606
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 260 TRYSLKIPACILPCGDSALVTRWSPRQYRVRPGGPRAAFPT 382
+RY L C+L G + L+ RW P+ Y +R G R T
Sbjct: 166 SRYRLYQAICLLTLGLAYLIFRWLPK-YFIRFVGTREPLAT 205
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 428 IYDTQQKTPIAIISNIHYTRLTDLTWSPDGNTLIASSTD 544
I+D + I ++ H ++ + WSP+G L SS D
Sbjct: 333 IWDLRSGKSIMVLDE-HIRQIVAMAWSPNGYQLATSSAD 370
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +2
Query: 395 VLAVGTRRSVLIYDTQQKTPIAIISNIHYTRLTDLTWSPDGNTLIASSTDGFCTI 559
V+AV R+V +++ + A+ T + + WS DG+ L +G I
Sbjct: 193 VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDI 247
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = +2
Query: 401 AVGTRRSVLIYDTQQKTPIAIISNIHYTRLTDLTWSPDGNTLIASSTDGFCTIITFANGE 580
+ G V ++D + + I + H + ++WSPD + + SS C I G
Sbjct: 206 SAGADGKVYVFDGKTGDQVYEI-DAHKGSIFSISWSPDSSQFVTSSAGYSCKIWDANTGS 264
Query: 581 L 583
L
Sbjct: 265 L 265
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 26.6 bits (56), Expect = 2.7
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Frame = +2
Query: 398 LAVGTRRSVL-IYDTQQKTPIAIISNIHYTRLTD------LTWSPDGNTLIASSTDGFCT 556
LAV + +L YDTQ + I ++N + + W P T +STD F +
Sbjct: 152 LAVSSCNGILYFYDTQTRELIKFLTNTIASLEAESEICSKAAWHPKNGTFAVASTDHFVS 211
Query: 557 IIT 565
+I+
Sbjct: 212 VIS 214
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/60 (21%), Positives = 30/60 (50%)
Frame = +2
Query: 365 RAAFPTRSRMVLAVGTRRSVLIYDTQQKTPIAIISNIHYTRLTDLTWSPDGNTLIASSTD 544
+ A+ T SR++++ ++ ++D + K + H ++ + WSPDG + + D
Sbjct: 436 QCAWSTDSRLLVSSSQDTTLKVWDVRSKKMKFDLPG-HEDQVFAVDWSPDGQRVASGGAD 494
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/68 (20%), Positives = 32/68 (47%)
Frame = +2
Query: 374 FPTRSRMVLAVGTRRSVLIYDTQQKTPIAIISNIHYTRLTDLTWSPDGNTLIASSTDGFC 553
F S VL + ++ ++D + + + N H +T + +PDG+T+ ++ ++G
Sbjct: 471 FHPNSAYVLTGSSDKTCRLWDVHRGHSVRVF-NGHTQPVTAVAIAPDGHTMASADSEGLI 529
Query: 554 TIITFANG 577
+ G
Sbjct: 530 HLWDIGTG 537
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 3.6
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 392 MVLAVGTRRSVLIYDT-QQKTPIAIISNIHYTRLTDLTWSPDGNTLIASSTDG 547
++L T RSV I DT QQ ++ ++ +Y+ + +SP N A+S DG
Sbjct: 152 LLLTGSTSRSVHIIDTRQQLDSVSSVNTQYYSNIVVDPFSP--NYFAANSYDG 202
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 488 LTDLTWSPDGNTLIASSTDGFCTI 559
L+ ++WSP G L+ SS D T+
Sbjct: 103 LSSISWSPSGELLLWSSFDSKITV 126
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 476 HYTRLTDLTWSPDGNTLIASSTDG 547
H + L +SP+GNTL ++ DG
Sbjct: 466 HTNTVWALAFSPNGNTLASADNDG 489
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 464 ISNIHYTRLTDLTWSPDGNTLIASSTDGFCTIITFANGELGEV 592
+++++ T T + +P GN+ I SS G T N G+V
Sbjct: 555 LTSVNSTTATSASSTPFGNSTITSSASGSTGEFTNTNSGNGDV 597
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +2
Query: 176 ALVAVPAGRAEADQ--GKAD-VKPINAVYIYTR 265
+LV+VP RA ADQ G+A V P +YTR
Sbjct: 727 SLVSVPCSRASADQRAGRAGRVGPGKCFRLYTR 759
>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
Spo14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 476 HYTRLTDLTWSPDGNTLIASSTDG 547
H +TD+ SPD L++ S DG
Sbjct: 297 HSLPVTDMQLSPDSEALVSVSADG 320
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +2
Query: 113 RLYHDDTLQ--TFYRRLQFSPDGALVAVPAGRAEADQG 220
+ Y D L+ +FY +L SPDGA +A G + G
Sbjct: 379 KTYKDPRLRISSFYVKLACSPDGATLACGGGVQDKTSG 416
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -2
Query: 390 RLRVGNAALGPPGRTRYCRGDQRVT 316
R R+G LGPP R Y D T
Sbjct: 158 RRRIGRIGLGPPKRAEYTLTDPSKT 182
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.0 bits (52), Expect = 8.3
Identities = 7/12 (58%), Positives = 12/12 (100%)
Frame = +2
Query: 233 KPINAVYIYTRY 268
+PINA+++YT+Y
Sbjct: 143 RPINAIFLYTKY 154
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,333
Number of Sequences: 5004
Number of extensions: 38837
Number of successful extensions: 195
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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