Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K09
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.3  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   1.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   1.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   9.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 287 CILPCGDSALVTRWS 331
           CI+P GD  L  RWS
Sbjct: 605 CIVPTGDLPLNIRWS 619


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 399 SPSGPGAPCSFT 434
           SPSGP +P SFT
Sbjct: 64  SPSGPNSPGSFT 75


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 399 SPSGPGAPCSFT 434
           SPSGP +P SFT
Sbjct: 64  SPSGPNSPGSFT 75


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 244 CCLYLHKIFSENPRLHPSVRGLRPRD 321
           C  Y  K+   NP  HP++  + P+D
Sbjct: 57  CSSYFQKLLLSNPCKHPTI--IMPQD 80


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +2

Query: 362 PRAAFPTRS-RMVLAVGTRRSVLIYDTQQK 448
           P   F  R  R  +AVG  +SV   DTQ K
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKSVTFKDTQGK 449


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 275 SENILCRYRQH*WA 234
           SE  LCRY  H +A
Sbjct: 732 SEQFLCRYEAHCFA 745


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 527 IASSTDGFCTIITFANG 577
           I+ + +GFC +I+  +G
Sbjct: 157 ISQANEGFCAVISMHDG 173


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = -2

Query: 552 QNPSVLEAINVLPSGDHVKSVNLV*CMLDMMAMGVFC 442
           +N ++  A+N++  GD   SV  +  + D       C
Sbjct: 471 KNKNLTPAVNIIVKGDVAGSVEALLDIFDTYTYDTIC 507


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 527 IASSTDGFCTIITFANG 577
           I+ + +GFC +I+  +G
Sbjct: 152 ISQANEGFCAVISMHDG 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,659
Number of Sequences: 438
Number of extensions: 3217
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)