Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K08
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    26   2.9  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    25   5.0  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    25   6.6  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    25   6.6  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   8.7  

>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 318 SLQRHM*RNEYISGRTDTPYNPF*TATFDCKVKP-YPTR*YSILPCH 181
           ++ +H+ R   +  R D  YNPF    F   +KP YP      +P H
Sbjct: 47  NIHKHLHRPPNVEKREDGTYNPFPKFHFAGSLKPVYPLSPIRKVPPH 93


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 80  YQNVQVYCALSRFDSIYIVRNSLRTFE 160
           Y+N++V     R D +Y V   LR+F+
Sbjct: 339 YENMKVILGRDRLDELYGVPQKLRSFQ 365


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 439 FNCIQRAFEVSFTPVR 392
           F CIQ+A+E+   PVR
Sbjct: 144 FKCIQKAYEILSDPVR 159


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -2

Query: 296 VMNIYLVAPILHTIHFRRQRLIVR*NRIQLADIASFLVTEFFRFRFQRSVNY-CG 135
           V+  +L+AP++      R+ LI++  R+ L+ +++    +FF      S+ Y CG
Sbjct: 387 VVGTFLIAPVIVPYWRMRRYLIIQLIRVFLSGLSTVHFQDFFFADQMVSLTYACG 441


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
 Frame = +2

Query: 257 LYGVSVRPDIYSLRHMWRCSDLTSM*SG---------GRQGETLPGVLYANQLSSYRRKR 409
           L     RP   S+ H+W+  DL    +G         G+ G  L   L A Q   Y+   
Sbjct: 339 LLDAGTRPGDQSIYHLWKSFDLNPQVAGACGEIVVMKGKLGSGLINPLVATQNFEYKMSN 398

Query: 410 YLESALNTI 436
            L+  + ++
Sbjct: 399 ILDKPVESV 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,856,825
Number of Sequences: 5004
Number of extensions: 37344
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)