Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K08
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0913 - 22548486-22548716                                         31   0.54 
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249...    27   6.6  
01_04_0031 + 15271193-15271342,15272134-15272182,15272894-15273294     27   6.6  
01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,973...    27   6.6  
11_06_0228 + 21497248-21498143,21499831-21501700,21501934-215020...    27   8.8  

>07_03_0913 - 22548486-22548716
          Length = 76

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 398 CKRTADSRTALRVRFLLVFHRFTWR 324
           C   AD  TA R  +LL  HR TWR
Sbjct: 30  CASVADMETATRFCYLLTVHRATWR 54


>11_06_0767 +
           27121761-27123335,27123701-27123910,27124843-27124911,
           27125387-27125656,27126027-27126377,27126480-27126757,
           27126887-27128330
          Length = 1398

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 354 SPCLPPLYMEVRSLQRHM*RNE-YISGRTDTPYN 256
           SP  PP+  ++ S + H  RNE Y SGR D   N
Sbjct: 476 SPVRPPMGFKMGSSEDHFERNELYSSGRMDGTNN 509


>01_04_0031 + 15271193-15271342,15272134-15272182,15272894-15273294
          Length = 199

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 277 TRYIFITSHVALQ*SYLHVKRWKTRRNLTRSAVRESAVLLQA 402
           T Y+  T H ++  +Y HVK W     + R AV+    L++A
Sbjct: 159 THYLLATPHASVLDAYPHVKSW-INDLMKRPAVKRVRELMEA 199


>01_01_1209 -
           9738501-9738516,9738703-9739161,9739389-9739608,
           9739708-9739831,9739927-9740635,9741826-9742132,
           9742213-9743704
          Length = 1108

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +1

Query: 226 LTIKRCRLKWIVWSIGATRYIFITSHVALQ*SYLHVKRWKTRRNLTRSAVRESAVLL 396
           + ++ C LK   W+IG   Y    + V L  S    KR +    L R  V  S +L+
Sbjct: 291 IVLRGCELKNTTWAIGVVVYAGKETKVMLNSSGAPSKRSRLETQLNRETVILSIMLI 347


>11_06_0228 +
           21497248-21498143,21499831-21501700,21501934-21502038,
           21502139-21502232,21502335-21502363
          Length = 997

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -2

Query: 341 HRFTWR*DHCNATCDVMNI-YLVAPILHTIHFRRQRLIVR*NRIQLADIASFLVT 180
           H FTW  D C+ +   + I + +A  +  I  + + ++ R +R ++ D+A+ L T
Sbjct: 122 HNFTWLIDKCHESLSKIKIRHKIANEIKDIKSQVKEVMERRDRYKIDDVATNLPT 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,743,383
Number of Sequences: 37544
Number of extensions: 229336
Number of successful extensions: 613
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)