Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K08
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28941-2|AAC71103.1| 1091|Caenorhabditis elegans Temporarily ass...    29   2.0  
U28941-1|AAC71102.1| 1107|Caenorhabditis elegans Temporarily ass...    29   2.0  
U39996-3|AAA81089.1|  621|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z99281-48|CAE18025.2|  661|Caenorhabditis elegans Hypothetical p...    27   6.0  
Z68337-2|CAA92746.2|  516|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>U28941-2|AAC71103.1| 1091|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 149, isoform a protein.
          Length = 1091

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 22/64 (34%), Positives = 30/64 (46%)
 Frame = +2

Query: 263 GVSVRPDIYSLRHMWRCSDLTSM*SGGRQGETLPGVLYANQLSSYRRKRYLESALNTIKN 442
           GVS   D+Y  RH+ + S L S+       E L  +   + LS   RK  LE+  N I  
Sbjct: 794 GVS-SSDVYPYRHLRKQSSLLSVLGVTSMQEMLLAITSLDSLSEAMRKAGLETT-NLIFG 851

Query: 443 VSYT 454
           + YT
Sbjct: 852 IDYT 855


>U28941-1|AAC71102.1| 1107|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 149, isoform b protein.
          Length = 1107

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 22/64 (34%), Positives = 30/64 (46%)
 Frame = +2

Query: 263 GVSVRPDIYSLRHMWRCSDLTSM*SGGRQGETLPGVLYANQLSSYRRKRYLESALNTIKN 442
           GVS   D+Y  RH+ + S L S+       E L  +   + LS   RK  LE+  N I  
Sbjct: 810 GVS-SSDVYPYRHLRKQSSLLSVLGVTSMQEMLLAITSLDSLSEAMRKAGLETT-NLIFG 867

Query: 443 VSYT 454
           + YT
Sbjct: 868 IDYT 871


>U39996-3|AAA81089.1|  621|Caenorhabditis elegans Hypothetical
           protein C56E6.3a protein.
          Length = 621

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -2

Query: 155 RSVNYCGQCKWNQNEREHSTLE 90
           +SVN  GQ KW + ER+H++LE
Sbjct: 528 KSVN--GQIKWQRKERKHNSLE 547


>Z99281-48|CAE18025.2|  661|Caenorhabditis elegans Hypothetical
           protein Y57G11C.42 protein.
          Length = 661

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 303 CGVAVILPPCKAVEDKEKPYPECCTRISCP 392
           CGV+    PC + E   K   ECC R + P
Sbjct: 535 CGVSPDFTPCVSNEIASKSLLECCKRKNLP 564


>Z68337-2|CAA92746.2|  516|Caenorhabditis elegans Hypothetical
           protein M7.2 protein.
          Length = 516

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +3

Query: 129 TLSAIVYGPLKPKPEKFSDKEGCYISELDTVLPYNQTLPSKMDCMEYRCDQIYIHYVTCG 308
           TL  + +GP +         +GC  S     +  +  LP+++  ++     + I Y+  G
Sbjct: 160 TLQELGFGPEEEDQNNNQADQGCRSSSFSNPISNDYQLPTRLQTLQ----NLVIQYMEQG 215

Query: 309 -VAVILPPCK-AVEDKEK 356
              V +P CK A+ED  K
Sbjct: 216 RFEVAIPLCKQALEDVVK 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,279,479
Number of Sequences: 27780
Number of extensions: 207665
Number of successful extensions: 540
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)