Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K08
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    24   0.79 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   1.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   1.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.8  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 159 KPKPEKFSDKEGCYISELDTVLPYNQTLPSKMDCMEYRCDQIYIHYV 299
           + + E+   KE   IS L     YN     K+ C  YR     I+Y+
Sbjct: 68  RDRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYRKLYYNINYI 114


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +3

Query: 159 KPKPEKFSDKEGCYISELDTVLPYNQTLPSKMDCMEYRCDQIYIHYV 299
           + + E+   KE   IS L     YN     K+ C  Y+     I+Y+
Sbjct: 68  RDRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYKKLYYNINYI 114


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +3

Query: 159 KPKPEKFSDKEGCYISELDTVLPYNQTLPSKMDCMEYRCDQIYIHYV 299
           + + E+   KE   IS L     YN     K+ C  Y+     I+Y+
Sbjct: 68  RDRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYKKLYYNINYI 114


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 330  CKAVEDKEKPYPECC 374
            C AVE K KPY   C
Sbjct: 1715 CTAVETKSKPYKFHC 1729


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 235 KRCRLKWIVWS 267
           +RC LKW  W+
Sbjct: 143 QRCVLKWASWT 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,914
Number of Sequences: 438
Number of extensions: 2691
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)