Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_K07
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 308 4e-85
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 308 6e-85
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 308 6e-85
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 176 2e-45
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 168 6e-43
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 110 1e-25
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 58 1e-09
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 47 2e-06
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 47 2e-06
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 43 3e-05
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 43 3e-05
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 38 2e-04
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 37 0.002
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 33 0.032
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 33 0.042
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 29 0.52
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 28 1.2
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 27 2.1
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ... 27 2.7
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 3.6
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun... 26 4.8
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 26 4.8
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 6.3
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 25 8.4
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 8.4
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 308 bits (756), Expect = 4e-85
Identities = 144/158 (91%), Positives = 151/158 (95%)
Frame = +1
Query: 109 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 288
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 289 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 468
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGT 120
Query: 469 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 582
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT 158
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 308 bits (755), Expect = 6e-85
Identities = 143/158 (90%), Positives = 151/158 (95%)
Frame = +1
Query: 109 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 288
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 289 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 468
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 469 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 582
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT 158
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 308 bits (755), Expect = 6e-85
Identities = 143/158 (90%), Positives = 151/158 (95%)
Frame = +1
Query: 109 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 288
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 289 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 468
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 469 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 582
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT 158
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 176 bits (428), Expect = 2e-45
Identities = 79/152 (51%), Positives = 109/152 (71%)
Frame = +1
Query: 121 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 300
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 301 AERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 480
ERE+G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFE
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355
Query: 481 AGISKNGQTREHALLAFTLGVKQLIVGVNKMD 576
AG + GQTREHA+LA T G+ L+V +NKMD
Sbjct: 356 AGFERGGQTREHAVLARTQGINHLVVVINKMD 387
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 168 bits (408), Expect = 6e-43
Identities = 77/149 (51%), Positives = 102/149 (68%)
Frame = +1
Query: 130 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 309
+++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD + ER
Sbjct: 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEER 237
Query: 310 ERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 489
RG+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G
Sbjct: 238 ARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGF 297
Query: 490 SKNGQTREHALLAFTLGVKQLIVGVNKMD 576
+NGQTREHA L LG+ +++V VNK+D
Sbjct: 298 LENGQTREHAYLLRALGISEIVVSVNKLD 326
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 110 bits (265), Expect = 1e-25
Identities = 65/158 (41%), Positives = 90/158 (56%)
Frame = +1
Query: 115 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 294
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 295 LKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 474
E+ RGITI A ++ET + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153
Query: 475 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 588
QTREH LLA +GVKQ++V +NK+D EP
Sbjct: 154 MP-------QTREHLLLARQVGVKQIVVYINKVDMVEP 184
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 57.6 bits (133), Expect = 1e-09
Identities = 48/148 (32%), Positives = 70/148 (47%)
Frame = +1
Query: 133 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 312
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 313 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 492
RGITI+ A F + +ID PGH DF + + D AV I+ + AG+
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV- 130
Query: 493 KNGQTREHALLAFTLGVKQLIVGVNKMD 576
QT+ A G+ ++I VNKMD
Sbjct: 131 -EAQTKVVWKQATKRGIPKVIF-VNKMD 156
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 46.8 bits (106), Expect = 2e-06
Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 19/147 (12%)
Frame = +1
Query: 133 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 312
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 313 RGITIDIA----LWK---------------FETGKYYVTIIDAPGHRDFIKNMITGTSQA 435
+GITI A W+ FE Y + IID PGH DF +
Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFEK-SYNINIIDTPGHIDFTIEVERALRVL 169
Query: 436 DCAVLIVAAGTGEFEAGISKNGQTREH 516
D AVL++ A +G I+ + Q R +
Sbjct: 170 DGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 46.8 bits (106), Expect = 2e-06
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Frame = +1
Query: 133 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 312
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 313 RGITIDIA----LWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 471
RGIT+ ++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 43.2 bits (97), Expect = 3e-05
Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Frame = +1
Query: 109 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 279
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 280 WVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 456
+ L AE D+ T + V +ID+PGH DF + D A+++V
Sbjct: 73 TAIS-LFAEMTDDDMKDMKEPADGTD-FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 43.2 bits (97), Expect = 3e-05
Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Frame = +1
Query: 109 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 279
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 280 WVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 456
+ L AE D+ T + V +ID+PGH DF + D A+++V
Sbjct: 73 TAIS-LFAEMTDDDMKDMKEPADGTD-FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 37.5 bits (83), Expect(2) = 2e-04
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +1
Query: 256 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETGKYYVTIIDAPGHRDFIKNMITGTS 429
GK + A+ + + GIT I + F+ G ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 430 QADCAVLIVAAGTG 471
AD VL+VA G
Sbjct: 243 IADIVVLVVAGDDG 256
Score = 22.2 bits (45), Expect(2) = 2e-04
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +1
Query: 136 IVVIGHVDSGKST 174
+ ++GHVD GK+T
Sbjct: 174 VTLMGHVDHGKTT 186
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +1
Query: 364 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 543
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 544 KQLIVGVNKMD 576
K +I+ NK+D
Sbjct: 163 KHIIILQNKVD 173
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 33.1 bits (72), Expect = 0.032
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 7/120 (5%)
Frame = +1
Query: 133 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIEKFEKEAQEMGKG----SFKYAWVLD 291
N ++ HVD GK+T L+ G I + T+ + E+ +G S +
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGITMKSSAISLFFK 80
Query: 292 KLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 471
+ E+ + D Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 81 VISQNDEKRVEKD----------YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 32.7 bits (71), Expect = 0.042
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Frame = +1
Query: 142 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA--QEMGKGSFKYAWVLDKLKAERER 315
++GHVD+GK+ +L + +++ E Q++G F + K K ++
Sbjct: 489 ILGHVDTGKTKLLDNL-------RRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKK 541
Query: 316 GITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 456
G K + + IID PGH F GTS + A+L++
Sbjct: 542 G--------KLQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.1 bits (62), Expect = 0.52
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +1
Query: 289 DKLKAER-ERGITIDIALWKFETGKYYV--TIIDAPGHRDFIKN 411
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.9 bits (59), Expect = 1.2
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Frame = +1
Query: 133 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 312
+ +V GH+ GKS L+Y + + + S +Y D ERE
Sbjct: 142 SFIVAGHLHHGKSALLDLLVYYT-----------HPDTKPPKRRSLRYT---DTHYLERE 187
Query: 313 RGITID-----IALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 456
R ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 188 RVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 320 IPRSRSAFSLSNTQAYLKEPLPISWASFSNFSMVRLSIPPH 198
IP+ A S+ N++ + ++ LP + S V+L +P H
Sbjct: 173 IPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 524
Score = 26.6 bits (56), Expect = 2.7
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +1
Query: 265 SFK-YAWVLDKLKA-ERERGITID-IALWKFETGKYYVTIIDAPGHRDFIKNMIT 420
+FK Y L+ LK E++ G++ID + F+ G + + PG+ DF+ N ++
Sbjct: 3 AFKPYTEALEVLKKYEKKDGLSIDDLIRHNFQGGLTFNDFLILPGYIDFVPNNVS 57
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 200 AVVSTNVPSKSSRRKPRKWVRVPS 271
A++S + K + +P KWV VPS
Sbjct: 224 ALISNGLKVKETSEEPEKWVVVPS 247
>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 123
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -3
Query: 447 HGAVSLRRSSDHVLDEISVSRSVDDGDIVFAGFELP 340
+ AV DH L + ++ + D ++FAG+++P
Sbjct: 28 NAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVP 63
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 350 SNFQRAISMVIPRSRSAFSLSNTQAYLKEPLPISWASFSNFSMV 219
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 477 EFTSTSGDNKHGAVSLRRSSDHVLDE 400
+F S+ + K+G + SSD VLDE
Sbjct: 1234 DFVSSKRNGKNGGSFIEESSDTVLDE 1259
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -3
Query: 450 KHGAVSLRRSSDHVLDEISVSRSVDDGDIVFAGFELPE 337
K G V + + V+DE ++ ++D+G + AG ++ E
Sbjct: 236 KRGIVIVNTARGAVMDEAALVEALDEGIVYSAGLDVFE 273
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +3
Query: 321 HHRY-CSLEVRNRQILCHHH 377
HH++ C L V+N+++ H H
Sbjct: 196 HHKFFCDLCVKNKKVFTHEH 215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,753
Number of Sequences: 5004
Number of extensions: 48874
Number of successful extensions: 193
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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