Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_K06
(555 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 28 1.1
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 27 2.5
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 26 4.3
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.3
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 25 5.7
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 7.5
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 25 7.5
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 7.5
SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subun... 25 9.9
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 25 9.9
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 25 9.9
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 504 NPMNGVWENHIYFLSLSLSTHLGNRL 427
+P NG W +Y LS+ TH+ N L
Sbjct: 46 SPQNGSWHPSLYGLSVPEKTHIQNSL 71
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 26.6 bits (56), Expect = 2.5
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 426 LNDYPDALKVRVT-ENKCDFPTHHSWDSFFRD 518
LN+YPDA+KV V K D T H D F++D
Sbjct: 590 LNEYPDAVKVYVEFAKKNDRKTLH--DFFYQD 619
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 218 YFASNTQGTRKIYLQLGTYGETTKNG 295
Y ASNT G+ G YG T NG
Sbjct: 76 YGASNTYGSNGSSNNYGNYGATNSNG 101
>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 103
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 73 FVYKQYFYYSFLSNTPSFLYLTL 5
++Y +F+YSFL + F Y++L
Sbjct: 80 YIYIYFFFYSFLCSPYLFKYISL 102
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = +3
Query: 249 KSISNWELMEKLRKMAQPDNFSVLKVSKQSFEVIRFEAELECRDKLARVLAKLDGRVVQL 428
K + N L E L ++ D + LK++++ + + LEC + ++ K +
Sbjct: 10 KLVENENLQEDLSRLNLEDEKNELKLNEKGGVLKENDEHLECSESFKKLAEKEEAYQTLK 69
Query: 429 NDY 437
N Y
Sbjct: 70 NSY 72
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -1
Query: 483 ENHIYFLSLSLSTHLGNRLIVRHDRRASLTPLRVYPDIR 367
+N+I+ + +HL NRL+ R + + R++ D++
Sbjct: 1273 QNYIFISMTNFISHLNNRLLNRRTKVSKKLYKRLFADLQ 1311
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 408 DGRVVQLNDYPDALKVRVTENKCDF 482
DGRVV+ +YP + E CDF
Sbjct: 240 DGRVVKGREYPWGIVEIENEEHCDF 264
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.0 bits (52), Expect = 7.5
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 297 QPDNFSVLKVSKQSFEVIRFEAELECRDKLARVLAKLDGRVVQLNDYPDALKVRVTENK 473
Q + SVLK Q + E ++ + + L KL + LND +++ T+NK
Sbjct: 1056 QKEELSVLK-GVQELTINNLEEKVNYLEADVKQLPKLKKELESLNDKDQLYQLQATKNK 1113
>SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subunit
Rpc31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 405 ASLTPLRVYPDIRVPLQ 355
A+ TP ++YPD +PLQ
Sbjct: 24 ANSTPTKLYPDRDIPLQ 40
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 555 DVHRVSSRPCQSHRERTNP 499
D+H + +RP Q ERT+P
Sbjct: 396 DIHEIRTRPYQVLPERTHP 414
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 24.6 bits (51), Expect = 9.9
Identities = 7/29 (24%), Positives = 15/29 (51%)
Frame = +3
Query: 417 VVQLNDYPDALKVRVTENKCDFPTHHSWD 503
+ ++N + + + N+CD+ HH D
Sbjct: 218 IARVNGFVEIWNRKTKNNRCDYKFHHDGD 246
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,318,937
Number of Sequences: 5004
Number of extensions: 46979
Number of successful extensions: 131
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -