Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K06
         (555 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1290 + 32399905-32399972,32400502-32400571,32400950-324017...    29   3.3  
04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935...    28   5.8  

>04_04_1290 +
           32399905-32399972,32400502-32400571,32400950-32401734,
           32403068-32403674
          Length = 509

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 365 FRFKSNHFKTLLRHFENRKVVRLGHFS*FLHKFPIGDR 252
           F+F+  +  T +    +  VV +G FS  LHKFP+  R
Sbjct: 15  FQFQDPNSWTCMTELVSDVVVEVGDFSFHLHKFPLMSR 52


>04_04_1228 + 31888350-31892228,31892568-31893298,31893511-31893586,
            31894089-31894164,31894571-31894656,31895414-31895482,
            31895579-31895588,31895711-31896207
          Length = 1807

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/55 (23%), Positives = 33/55 (60%)
 Frame = +3

Query: 183  ISTRKWKLTLKYISLPTHKVHGKSISNWELMEKLRKMAQPDNFSVLKVSKQSFEV 347
            +S  KW++ ++Y+S+ ++   GK++S  +L+  L K+++    +  K+++    V
Sbjct: 1136 LSDYKWQVPVEYLSISSYHGSGKALS--QLLSHLPKLSELYLMNCNKITRMCIAV 1188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,585,258
Number of Sequences: 37544
Number of extensions: 251214
Number of successful extensions: 620
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)