Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K06
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF400666-1|AAL28025.1|  481|Caenorhabditis elegans CUX-7 protein.      92   3e-19
AC006605-6|AAK85446.2|  495|Caenorhabditis elegans Clk-2 upstrea...    92   3e-19
Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z83229-3|CAB05740.3|  369|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical...    27   6.9  
AL132902-7|CAB81993.1|  485|Caenorhabditis elegans Hypothetical ...    27   9.1  
AC006769-15|AAF60587.1|  337|Caenorhabditis elegans Serpentine r...    27   9.1  

>AF400666-1|AAL28025.1|  481|Caenorhabditis elegans CUX-7 protein.
          Length = 481

 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 44/112 (39%), Positives = 67/112 (59%)
 Frame = +3

Query: 219 ISLPTHKVHGKSISNWELMEKLRKMAQPDNFSVLKVSKQSFEVIRFEAELECRDKLARVL 398
           + LP   + G+SISNW+LME+L++   P      KV + + + + FEAEL     + + +
Sbjct: 37  VVLPRMTIPGQSISNWDLMERLKRAIDPIQMDSCKVRESNIDSVIFEAELLSLGIMQKTM 96

Query: 399 AKLDGRVVQLNDYPDALKVRVTENKCDFPTHHSWDSFFRDATDMDEMKPGER 554
             LDG  ++++ + + LKV+  E K DFP+ H WD +F     MDEMKPGER
Sbjct: 97  KILDGFSMKVSGFAEPLKVKTKEAKLDFPSRHDWDDWFM-KHKMDEMKPGER 147


>AC006605-6|AAK85446.2|  495|Caenorhabditis elegans Clk-2 upstream,
           human gene xe7related protein 7 protein.
          Length = 495

 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 44/112 (39%), Positives = 67/112 (59%)
 Frame = +3

Query: 219 ISLPTHKVHGKSISNWELMEKLRKMAQPDNFSVLKVSKQSFEVIRFEAELECRDKLARVL 398
           + LP   + G+SISNW+LME+L++   P      KV + + + + FEAEL     + + +
Sbjct: 37  VVLPRMTIPGQSISNWDLMERLKRAIDPIQMDSCKVRESNIDSVIFEAELLSLGIMQKTM 96

Query: 399 AKLDGRVVQLNDYPDALKVRVTENKCDFPTHHSWDSFFRDATDMDEMKPGER 554
             LDG  ++++ + + LKV+  E K DFP+ H WD +F     MDEMKPGER
Sbjct: 97  KILDGFSMKVSGFAEPLKVKTKEAKLDFPSRHDWDDWFM-KHKMDEMKPGER 147


>Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical
           protein K02C4.3 protein.
          Length = 1307

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 318 LKVSKQSFEVIRFEAELECRDKLARVLAKLDG 413
           LK +K+    +R   EL CRD L+ V AKL G
Sbjct: 553 LKCNKEQLVQLRSHREL-CRDSLSEVRAKLSG 583


>Z83229-3|CAB05740.3|  369|Caenorhabditis elegans Hypothetical
           protein F54F11.3 protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -3

Query: 289 FRSFSISSQLEIDFPCTLCVGSEIYFK-VSFHFLVEIIYKVNYISKFHRKL 140
           F  F +     + FP ++    E     VSF+++++  Y   +I  FHR L
Sbjct: 16  FPIFILEDTRALKFPYSMLQALEFVLTFVSFYYVIKCCYVAIHIKSFHRNL 66


>AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical
           protein Y102A5C.33 protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 208 VSFHFLVEIIYKVNYISKFHRKL 140
           + +HF  + +Y  NYIS + RKL
Sbjct: 131 LKYHFPYDFLYSQNYISNYVRKL 153


>AL132902-7|CAB81993.1|  485|Caenorhabditis elegans Hypothetical
           protein Y71A12B.8 protein.
          Length = 485

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -1

Query: 480 NHIYFLSLSLSTHLGNRLIVRHDRRASLTPLRVYPDIR 367
           N + F+  + S+HL + +IV  DR+A++ P R   D+R
Sbjct: 38  NSVRFIVRNRSSHLKHTIIVEKDRKAAI-PGRSGTDLR 74


>AC006769-15|AAF60587.1|  337|Caenorhabditis elegans Serpentine
           receptor, class j protein19 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 216 YISLPTHKVHGKSISNWELMEKLRKMAQPD 305
           YI +P  K+H +SI N   +  L   A PD
Sbjct: 160 YIRIPFRKLHNESIDNINFVAGLFSEASPD 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,611,104
Number of Sequences: 27780
Number of extensions: 255673
Number of successful extensions: 768
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)