Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K05
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    31   0.081
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    26   3.0  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    24   9.3  

>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 31.1 bits (67), Expect = 0.081
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 227 VLHLWDLEVDRRVRLLQPHVQLAEALFVNENXXXXXXHPEI 349
           V+++WD+E  + VR L+ H +   AL  N+N        E+
Sbjct: 189 VIYIWDIESTKSVRSLKGHSERVAALAWNDNTLTSGGKDEV 229


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 227 VLHLWDLEVDRRVRLLQPH 283
           ++HLWD+   RR++ ++ H
Sbjct: 528 LIHLWDIGTGRRIKTMRGH 546


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 84  EVVIANNIDFYQSDNSMKRKRQRKPL 7
           EVV+ +   F  +D  +KRKR R PL
Sbjct: 293 EVVVTDQPLFSTADVPVKRKRGRPPL 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,547,298
Number of Sequences: 5004
Number of extensions: 25602
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)