Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K05
         (448 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0021 - 155700-156023                                             41   5e-04
11_01_0023 - 162079-162402                                             41   5e-04
01_05_0378 + 21628517-21628759                                         30   0.97 
12_01_0474 + 3718846-3719097                                           27   9.1  
01_05_0690 - 24326129-24326401                                         27   9.1  

>12_01_0021 - 155700-156023
          Length = 107

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = +1

Query: 268 ATSAPRTASGXXXXXXXXXXXXXXXXXXXXGAGSGGMWRFYTDDSPGVKVGAV*VLVMSL 447
           AT  PR  +                     G G   M RFYTD++PG+++    VLVMSL
Sbjct: 22  ATVGPRGTAAAAAGMRRRRASTAGGSGGFSGGGGSNMLRFYTDEAPGLRLSPTMVLVMSL 81


>11_01_0023 - 162079-162402
          Length = 107

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = +1

Query: 268 ATSAPRTASGXXXXXXXXXXXXXXXXXXXXGAGSGGMWRFYTDDSPGVKVGAV*VLVMSL 447
           AT  PR  +                     G G   M RFYTD++PG+++    VLVMSL
Sbjct: 22  ATVGPRGTAAAAAGMRRRRASTAGGSGGFSGGGGSNMLRFYTDEAPGLRLSPTMVLVMSL 81


>01_05_0378 + 21628517-21628759
          Length = 80

 Score = 29.9 bits (64), Expect = 0.97
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 358 GAGSGGMWRFYTDDSPGVKVGAV*VLVMSL 447
           G G+  M +FYTD++ G K+    VL+MS+
Sbjct: 31  GGGASTMLQFYTDEAAGRKMSPNSVLIMSI 60


>12_01_0474 + 3718846-3719097
          Length = 83

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 364 GSGGMWRFYTDDSPGVKVGAV*VLVMSL 447
           G+  M +FYT+++ G K+    VL+MS+
Sbjct: 35  GTSTMLQFYTEEAAGCKMSPNAVLIMSI 62


>01_05_0690 - 24326129-24326401
          Length = 90

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 338 HPEIAAQVLVQVACGASIQMILLVLKWVQY 427
           HP +  + LV+ ACG    +    ++W+Q+
Sbjct: 44  HPYVPPEALVECACGGGWWLTTSSVQWLQH 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,681,693
Number of Sequences: 37544
Number of extensions: 161757
Number of successful extensions: 292
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)