Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K05
         (448 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25085-1|AAA19706.1|   96|Homo sapiens Sec61-complex beta-subuni...    55   1e-07
CR542159-1|CAG46956.1|   96|Homo sapiens SEC61B protein.               55   1e-07
CR456883-1|CAG33164.1|   96|Homo sapiens SEC61B protein.               55   1e-07
BC001734-1|AAH01734.1|   96|Homo sapiens Sec61 beta subunit prot...    55   1e-07
AL137067-2|CAC08000.1|   96|Homo sapiens Sec61 beta subunit prot...    55   1e-07
AK223384-1|BAD97104.1|   96|Homo sapiens protein translocation c...    52   9e-07

>L25085-1|AAA19706.1|   96|Homo sapiens Sec61-complex beta-subunit
           protein.
          Length = 96

 Score = 55.2 bits (127), Expect = 1e-07
 Identities = 24/29 (82%), Positives = 27/29 (93%)
 Frame = +1

Query: 361 AGSGGMWRFYTDDSPGVKVGAV*VLVMSL 447
           AG+GGMWRFYT+DSPG+KVG V VLVMSL
Sbjct: 50  AGTGGMWRFYTEDSPGLKVGPVPVLVMSL 78


>CR542159-1|CAG46956.1|   96|Homo sapiens SEC61B protein.
          Length = 96

 Score = 55.2 bits (127), Expect = 1e-07
 Identities = 24/29 (82%), Positives = 27/29 (93%)
 Frame = +1

Query: 361 AGSGGMWRFYTDDSPGVKVGAV*VLVMSL 447
           AG+GGMWRFYT+DSPG+KVG V VLVMSL
Sbjct: 50  AGTGGMWRFYTEDSPGLKVGPVPVLVMSL 78


>CR456883-1|CAG33164.1|   96|Homo sapiens SEC61B protein.
          Length = 96

 Score = 55.2 bits (127), Expect = 1e-07
 Identities = 24/29 (82%), Positives = 27/29 (93%)
 Frame = +1

Query: 361 AGSGGMWRFYTDDSPGVKVGAV*VLVMSL 447
           AG+GGMWRFYT+DSPG+KVG V VLVMSL
Sbjct: 50  AGTGGMWRFYTEDSPGLKVGPVPVLVMSL 78


>BC001734-1|AAH01734.1|   96|Homo sapiens Sec61 beta subunit
           protein.
          Length = 96

 Score = 55.2 bits (127), Expect = 1e-07
 Identities = 24/29 (82%), Positives = 27/29 (93%)
 Frame = +1

Query: 361 AGSGGMWRFYTDDSPGVKVGAV*VLVMSL 447
           AG+GGMWRFYT+DSPG+KVG V VLVMSL
Sbjct: 50  AGTGGMWRFYTEDSPGLKVGPVPVLVMSL 78


>AL137067-2|CAC08000.1|   96|Homo sapiens Sec61 beta subunit
           protein.
          Length = 96

 Score = 55.2 bits (127), Expect = 1e-07
 Identities = 24/29 (82%), Positives = 27/29 (93%)
 Frame = +1

Query: 361 AGSGGMWRFYTDDSPGVKVGAV*VLVMSL 447
           AG+GGMWRFYT+DSPG+KVG V VLVMSL
Sbjct: 50  AGTGGMWRFYTEDSPGLKVGPVPVLVMSL 78


>AK223384-1|BAD97104.1|   96|Homo sapiens protein translocation
           complex beta variant protein.
          Length = 96

 Score = 52.0 bits (119), Expect = 9e-07
 Identities = 23/29 (79%), Positives = 26/29 (89%)
 Frame = +1

Query: 361 AGSGGMWRFYTDDSPGVKVGAV*VLVMSL 447
           AG+G MWRFYT+DSPG+KVG V VLVMSL
Sbjct: 50  AGTGRMWRFYTEDSPGLKVGPVPVLVMSL 78


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,688,819
Number of Sequences: 237096
Number of extensions: 882582
Number of successful extensions: 1490
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3644351872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)