Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K05
         (448 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071155-1|AAL48777.1|  100|Drosophila melanogaster RE18615p pro...    60   1e-09
AJ249754-1|CAB56698.1|  100|Drosophila melanogaster sec61beta pr...    60   1e-09
AE013599-1924|AAF58229.1|  100|Drosophila melanogaster CG10130-P...    60   1e-09

>AY071155-1|AAL48777.1|  100|Drosophila melanogaster RE18615p
           protein.
          Length = 100

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 26/30 (86%), Positives = 28/30 (93%)
 Frame = +1

Query: 358 GAGSGGMWRFYTDDSPGVKVGAV*VLVMSL 447
           GAG+GGMWRFYTDDSPG+KVG V VLVMSL
Sbjct: 53  GAGTGGMWRFYTDDSPGIKVGPVPVLVMSL 82


>AJ249754-1|CAB56698.1|  100|Drosophila melanogaster sec61beta
           protein protein.
          Length = 100

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 26/30 (86%), Positives = 28/30 (93%)
 Frame = +1

Query: 358 GAGSGGMWRFYTDDSPGVKVGAV*VLVMSL 447
           GAG+GGMWRFYTDDSPG+KVG V VLVMSL
Sbjct: 53  GAGTGGMWRFYTDDSPGIKVGPVPVLVMSL 82


>AE013599-1924|AAF58229.1|  100|Drosophila melanogaster CG10130-PA
           protein.
          Length = 100

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 26/30 (86%), Positives = 28/30 (93%)
 Frame = +1

Query: 358 GAGSGGMWRFYTDDSPGVKVGAV*VLVMSL 447
           GAG+GGMWRFYTDDSPG+KVG V VLVMSL
Sbjct: 53  GAGTGGMWRFYTDDSPGIKVGPVPVLVMSL 82


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,347,513
Number of Sequences: 53049
Number of extensions: 272364
Number of successful extensions: 483
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1435027293
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)