Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K05
         (448 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025715-6|AAK68450.1|   81|Caenorhabditis elegans Hypothetical ...    49   2e-06
U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical p...    28   3.6  

>AC025715-6|AAK68450.1|   81|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.9 protein.
          Length = 81

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 20/30 (66%), Positives = 25/30 (83%)
 Frame = +1

Query: 358 GAGSGGMWRFYTDDSPGVKVGAV*VLVMSL 447
           G  +GG+WRFYT+DS G+K+G V VLVMSL
Sbjct: 32  GGNNGGLWRFYTEDSTGLKIGPVPVLVMSL 61


>U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical
           protein C56C10.1 protein.
          Length = 617

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 206 HFSLLLRVLHLWDLEVDRRVRLLQPHVQLAEAL 304
           HF L  +   +W++E+D+RV  L+P+V+ A  +
Sbjct: 67  HFDLQ-KSPQVWNIEIDQRVFFLRPNVENARKI 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,553,560
Number of Sequences: 27780
Number of extensions: 144252
Number of successful extensions: 323
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)