Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K04
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...   102   2e-23
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...   102   2e-23
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    64   1e-11
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   2.6  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   3.4  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   7.8  

>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score =  102 bits (245), Expect = 2e-23
 Identities = 47/100 (47%), Positives = 62/100 (62%)
 Frame = +3

Query: 9   MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 188
           MK+ +C++SG K+YPG G+  V+ D K F F+N K E+  L R+NPR+++WTVLYRR  K
Sbjct: 1   MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60

Query: 189 KGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 308
           KG  EE               IVGA+L  I  KRN +PEV
Sbjct: 61  KGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score =  102 bits (245), Expect = 2e-23
 Identities = 47/100 (47%), Positives = 62/100 (62%)
 Frame = +3

Query: 9   MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 188
           MK+ +C++SG K+YPG G+  V+ D K F F+N K E+  L R+NPR+++WTVLYRR  K
Sbjct: 1   MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60

Query: 189 KGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 308
           KG  EE               IVGA+L  I  KRN +PEV
Sbjct: 61  KGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 63.7 bits (148), Expect = 1e-11
 Identities = 27/61 (44%), Positives = 34/61 (55%)
 Frame = +3

Query: 9   MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 188
           M++  C +    +YPGHG   V+ D K F F  SKC     M+RNPRKV WT  YR+   
Sbjct: 1   MRVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHG 60

Query: 189 K 191
           K
Sbjct: 61  K 61


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
 Frame = -3

Query: 310  LTSGFMLRLAMMSLSEAPTIARWNFCVLLVRFLACSSSWPFLNLRL---YRTVHVTLRGF 140
            +T   +L+++    S AP I       L+V     SS   F N  +   Y    ++L+ F
Sbjct: 1001 MTEELLLQISSKLSSVAPKILNAVLYNLVVSDDQISSQEAFENFEVKMAYTVRQLSLKVF 1060

Query: 139  LLIKWAASHLEFKNVNVLPSTLTMV 65
            LL   + S ++FK  NV   T  +V
Sbjct: 1061 LLFLKSCSDVDFKPYNVFIYTAFVV 1085


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 349 SFAALIACSLCAFLT--SGFMLRLAMMSLSEAPTIARWNFCVLLVRFLACSSSWPFLNL 179
           +F +L+ CS+C FLT   GF + +   ++    T       ++ + + A + + P L L
Sbjct: 329 TFGSLLTCSVCLFLTYVGGFSVHMMKTTMLIGLTATT---LIIFILYFATAQTLPCLAL 384


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 71   HGFSMARIDLVATVSAKTDLHFG 3
            H FS  ++DLV T      LHFG
Sbjct: 1768 HVFSREKLDLVITPQLIETLHFG 1790


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,732,337
Number of Sequences: 5004
Number of extensions: 31734
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)