Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K03
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    28   0.77 
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    26   3.1  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   7.2  

>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 231 SKETSSRRSLRTKIYMDCS 287
           SKET+S  +L T IY DCS
Sbjct: 201 SKETTSLETLPTSIYFDCS 219


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 140 GVSFKNRNDIEKDTAKNETGGIERNEVEKRTRPSFSSAAPRAEFL 6
           G+ F N   +    A+N    +  NEV  R+ PS  S   R+ FL
Sbjct: 9   GIDFGNSKTVIA-VARNRAIDVIVNEVSNRSTPSLVSYGERSRFL 52


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
            Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -1

Query: 461  FKPSFVLVIYVWNVSVSIFLVAHIRNSLHSSFLEHFHK 348
            FKPS + V+Y W    S   +  + +    S +  F +
Sbjct: 1037 FKPSLMEVVYAWAHGASFAQICKMTDVYEGSLIRMFRR 1074


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,896,726
Number of Sequences: 5004
Number of extensions: 34362
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)