Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K03
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0768 + 25036945-25037296,25037499-25037722,25037902-250379...    33   0.19 
03_06_0527 - 34520419-34520536,34520695-34520953,34521041-34521095     30   1.0  
02_01_0522 + 3779404-3779439,3779594-3779709,3780120-3780327,378...    29   1.8  
01_05_0777 + 25110356-25110662,25112569-25112789,25112880-251131...    29   3.1  
12_02_0977 + 24999211-25000275,25000375-25000521,25000805-25001179     28   4.1  
08_02_1458 - 27270834-27271320,27271752-27271961,27272627-272736...    27   7.2  

>01_05_0768 +
           25036945-25037296,25037499-25037722,25037902-25037955,
           25038006-25038253,25038909-25039296,25039392-25039802,
           25039919-25040077,25040632-25040979
          Length = 727

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = -2

Query: 145 AAVLVSKIVMTSRKIPRRMRPAGLRGTKWRNERGHLSAALRLV 17
           AA ++    +  R++ R +R  GLRGT++R   G L+  LRLV
Sbjct: 44  AAQMLEWAWLAPRRMERALRAQGLRGTQYRFLHGDLTEDLRLV 86


>03_06_0527 - 34520419-34520536,34520695-34520953,34521041-34521095
          Length = 143

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 306 KSNWMLLNNPYISWFAGSSETRFPSTHKSYITTGD 202
           +SNW  LN P     AG ++   P  H + I TG+
Sbjct: 108 RSNWAFLNEPPQEEIAGKAQNYAPQFHVARIATGN 142


>02_01_0522 +
           3779404-3779439,3779594-3779709,3780120-3780327,
           3781446-3781611,3781713-3781842,3782496-3782619,
           3782794-3782844,3783140-3783262,3783504-3783602,
           3783680-3783790,3783868-3783957,3784035-3784175,
           3787913-3788116,3788154-3788290,3788429-3788662,
           3789535-3789829,3789963-3790017,3790144-3790245,
           3790581-3790669,3790807-3790899
          Length = 867

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 428 WNVSVSIFLVAHIRNSLHSSFLEHF 354
           W    + FL+ H+RN   S+ L+HF
Sbjct: 624 WRKDFATFLIEHLRNKWKSTMLDHF 648


>01_05_0777 +
           25110356-25110662,25112569-25112789,25112880-25113127,
           25113274-25113664,25113751-25114155,25115260-25115366,
           25115833-25116170,25116206-25116486,25116645-25116889,
           25116998-25117382,25117459-25117884
          Length = 1117

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 109 RKIPRRMRPAGLRGTKWRNERGHLSAALRLV 17
           R++ R +R  GLRGT +R   G+L    RL+
Sbjct: 612 RRLGRALRSQGLRGTDYRFPSGYLKEFARLL 642


>12_02_0977 + 24999211-25000275,25000375-25000521,25000805-25001179
          Length = 528

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/76 (25%), Positives = 31/76 (40%)
 Frame = -2

Query: 457 NHHLYW*FMSGTFLCQFSWSHTSVIHFTLRSLNIFIKRSTEFYPFPHILSEVKLDALEQS 278
           NHHL W ++ G    +      +++   L    +      E+ P P  L E  L+ L+ S
Sbjct: 436 NHHLRWIYLRG---FRGGKCEVALMKIMLDKARVLTLLRMEYSPLPSSLIEHTLNELDLS 492

Query: 277 IYILVRRLLRDEVSFD 230
           ++I       D V  D
Sbjct: 493 LWIFKTHTPNDAVRGD 508


>08_02_1458 -
           27270834-27271320,27271752-27271961,27272627-27273624,
           27274099-27274195,27274278-27274393,27274465-27274590,
           27275123-27275233,27275347-27275428,27275844-27275989,
           27276457-27276650,27277277-27277388,27277869-27278001,
           27278295-27278437,27278488-27278562,27278830-27278937,
           27279072-27279197,27279752-27279836,27280358-27280440,
           27280545-27280625,27280709-27280789,27281960-27282034,
           27282112-27282498,27282902-27283036
          Length = 1396

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 410 IFLVAHIRNSLHSSFLEHFHKAVD*VLPVSSHPVRSQ 300
           IFL    +   +  FL  FH     +L  S+HP+R+Q
Sbjct: 318 IFLSTDTKKLRNEGFLSPFHPRYPDILTNSAHPMRAQ 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,407,992
Number of Sequences: 37544
Number of extensions: 223354
Number of successful extensions: 565
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)