Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K03
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical...    29   2.1  
AF040654-2|AAK21449.2| 1014|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z50795-2|CAA90663.1|  618|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z83219-1|CAB05694.1|  322|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    27   6.5  

>AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.2 protein.
          Length = 1140

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 397 HTSVIHFTLRSLNIFIKRSTEFYPFPHILSEVKLDALEQSI 275
           H   IH +  SLN+  K   EF+P+ + L    L  ++++I
Sbjct: 406 HLRNIHISYPSLNLVYKAVAEFFPYKNSLDGSLLSKVQENI 446


>AF040654-2|AAK21449.2| 1014|Caenorhabditis elegans Hypothetical
           protein R06B10.2 protein.
          Length = 1014

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 397 HTSVIHFTLRSLNIFIKRSTEFYPFPHILSEVKLDALEQSI 275
           H   IH +  SLN+  K   EF+P+ + L    L  ++++I
Sbjct: 170 HLRNIHISYPSLNLVYKAVAEFFPYKNSLDGSLLPQVQENI 210


>Z50795-2|CAA90663.1|  618|Caenorhabditis elegans Hypothetical
           protein R166.2 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 339 LSFTRFLTSCQKSNWMLLNNPYISWFAGSSETRFPSTHKSYIT 211
           L F +F ++ +K  WM     Y  W +G +E    + HK++ T
Sbjct: 88  LPFRQFDSAPEKLIWMRNGMKYDDWISGDNEDGSHTIHKNFPT 130


>Z83219-1|CAB05694.1|  322|Caenorhabditis elegans Hypothetical
           protein C31C9.2 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 166 PRTNSRSAAVLVSKIVMT-SRKIPRRMRPAGLRGTKW 59
           P+ NSRSAA L   ++++ SR +P+    A ++  KW
Sbjct: 99  PQANSRSAAELTCTLILSLSRHVPQ--AAASMKAGKW 133


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 379  FTLRSLNIFIKRSTEFYPFPHILSEV 302
            FTL+S+ +++   +E+Y   HI++ V
Sbjct: 1181 FTLKSVRVYLGEHSEYYTIEHIVTAV 1206


>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical protein
            R03G5.3 protein.
          Length = 1311

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 443  LVIYVWNVSVSIFLVAHIRNSLHSSFLE 360
            +V  VWN+SV   LV HIR S    F +
Sbjct: 1147 VVSNVWNLSVMETLVTHIRKSSRCHFFQ 1174


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 379  FTLRSLNIFIKRSTEFYPFPHILSEV 302
            FTL+S+ +++   +E+Y   HI++ V
Sbjct: 1181 FTLKSVRVYLGEHSEYYTIEHIVTAV 1206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,635,475
Number of Sequences: 27780
Number of extensions: 197688
Number of successful extensions: 669
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)