Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K02
         (546 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         27   0.11 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   1.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.3  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   3.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.3  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 309 QWTLHCGRIPRQWT--RVQTHLTNSKNQPELSVKENVVRKPWHGGRAFSNNP 458
           Q+ L+   +PRQ++  R + + + SK QP+   ++   R P++  R     P
Sbjct: 191 QYNLNSKSLPRQYSQSRGRHNQSRSKRQPKTGREDQTRRNPYYRPRTSRTEP 242


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 7   EGPADTSGRPKLVL 48
           EG A TSG+P+L+L
Sbjct: 663 EGEAKTSGQPRLLL 676


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 444 MPYHHAMVSSRRFLSPKVQADF*SWSG 364
           +PY  A V++   LSPK  +    W+G
Sbjct: 286 LPYFAAAVAAASNLSPKTNSSPDLWNG 312


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 130 AVSHHRIWMRPDSSRRAS 77
           A S HRI+M P+S  + S
Sbjct: 95  AQSPHRIYMHPESPSKGS 112


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 378  KNQPELSVKENVVRKPWHGGRAFSNNPRLSNY 473
            +N+P   + E   R+    G   SNNP +S +
Sbjct: 1383 ENKPIFYLDEAFQRRVTQIGSTSSNNPSISAF 1414


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 378  KNQPELSVKENVVRKPWHGGRAFSNNPRLSNY 473
            +N+P   + E   R+    G   SNNP +S +
Sbjct: 1383 ENKPIFYLDEAFQRRVTQIGSTSSNNPSISAF 1414


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,068
Number of Sequences: 336
Number of extensions: 2460
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13411456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)