Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_K02
(546 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo... 26 3.2
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 4.2
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 26 4.2
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 26 4.2
SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomy... 25 7.3
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 25 7.3
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 7.3
SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like |Schiz... 25 9.6
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 9.6
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 25 9.6
>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +3
Query: 390 ELSVKENVVRKPWHGGRAFSNNPRLSNYTLE*ENLSPNTRCVPAA 524
ELS++E+++ + N P +S ++ + E L+P++ V +A
Sbjct: 172 ELSIQEHILSPDVLVEKLMKNEPMISPFSADLERLTPSSYTVDSA 216
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +2
Query: 458 PPE*LHSRVRKPVAKYQVCSGSNT*EPVS 544
PP LH R KPV+K G T PVS
Sbjct: 51 PPTRLHDRSFKPVSKNYESEGRLTPPPVS 79
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 294 KAMTAQWTLHCGRI-PRQWTRVQTHLTNS 377
+ +T++W H GRI W THL +
Sbjct: 512 EVITSRWAFHTGRILGMSWNAKSTHLATA 540
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Frame = +1
Query: 13 PADTSGRPKLVLEPRT---VKEPVNSLASTSQAS----SIFGGARP 129
P ++S RP+L L+PR+ V A+T+ +S FGGA+P
Sbjct: 235 PRESSERPRLNLKPRSSSNVNTEATPSATTTTSSKPKRDPFGGAKP 280
>SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 223
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 316 HCTAVGFRVNGRGFKP 363
HC + GF++NGR +P
Sbjct: 198 HCESKGFQLNGRVIRP 213
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 99 GLIHIRWCETARGKAQRALGRV 164
G+I+ RW E+A A++ L R+
Sbjct: 636 GIIYCRWLESAYAAAEKELNRL 657
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +2
Query: 281 RGEF*SDDGAVDTALRSDSASMDAGSNPPDQL*KSA*TFGERKRREETMAW 433
+G+ DDG + D ++A + +L ++ ER+ RE +AW
Sbjct: 988 KGKTAVDDGKFEDLSEKDLKKIEAKATKKKKLTRNEIKAKERRARERELAW 1038
>SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 24.6 bits (51), Expect = 9.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 206 LSDKSNQLKPLL*ESVPEFLLIIKPRGEF*SDD 304
LS+ N P L +++ +FL I +PRG S D
Sbjct: 67 LSENENFRNPKLLDNLQDFLDIKEPRGTMISKD 99
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 24.6 bits (51), Expect = 9.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 285 ENFKAMTAQWTLHCG 329
E F ++ AQW HCG
Sbjct: 484 EPFNSLGAQWCAHCG 498
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 544 RYWFSSVAAGTHLVFGDRFSYSR 476
+YW S + H+ GD +YSR
Sbjct: 946 QYWSSIALSTAHVQHGDTLNYSR 968
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,177,122
Number of Sequences: 5004
Number of extensions: 40347
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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