Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K02
         (546 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    31   0.79 
02_05_0237 + 27095817-27097433                                         29   2.4  
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333...    28   5.6  
02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530     28   5.6  
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306...    27   7.4  
04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204     27   7.4  
10_02_0061 - 4812903-4812940,4813140-4813536                           27   9.8  

>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = -1

Query: 531  QVLLPEHTWYLATGFLTRECSYSGGDY*KMPYHHAMVSSRRFLSPKVQADF*SWSGGFEP 352
            ++ LP +   L  G +T  CS   G     PYH  M+S    LSP ++A   +    F P
Sbjct: 1513 ELQLPSYVEGLDFGMMTSACSPISGT----PYHQGMMSPSYLLSPDIRASPTAADAQFSP 1568


>02_05_0237 + 27095817-27097433
          Length = 538

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -3

Query: 154 RAL*AFPRAVSHHRIWMRPDSSRRASLPVLSRSAAPTPVSVYRMCPLDPR 5
           RAL A  R+   HRI ++   +    LP+L RS   T  S  RM P  PR
Sbjct: 9   RALAARHRSHLGHRIEVKSHHASPPRLPLLPRSPGLTLASRPRMLPARPR 58


>12_01_0423 +
           3337401-3337419,3337777-3338235,3338650-3338735,
           3338974-3339022,3339225-3339533,3339555-3339710,
           3339871-3340086,3340404-3340906,3341050-3341116,
           3341215-3341272,3341561-3341699,3341840-3341956,
           3342069-3342246,3342459-3343093
          Length = 996

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 22  TSGRPKLVLEPRTVKEPVNSLASTSQASSIFGGARP 129
           T  +  +V++P  VK P   L +T Q S   GG+ P
Sbjct: 642 TPSQSNMVMQPALVKNPFGMLPATPQMSIGNGGSAP 677


>02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530
          Length = 519

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = +1

Query: 31  RPKLVLEP-----RTVKEPVNSLASTSQASSIFGGARPREERLKE 150
           RP+LVL+P          P  + A+ S+ S  FG ARPRE+ L E
Sbjct: 252 RPRLVLDPPKRDASATPTPPPAEAARSRPSP-FGAARPREDILAE 295


>06_02_0046 +
           10928708-10928798,10929997-10930077,10930567-10930685,
           10931275-10931894,10931992-10933184,10933280-10933359,
           10933751-10933846,10933931-10934004,10936007-10936151,
           10936323-10936487
          Length = 887

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 124 SHHRIWMRPDSSRRASLPVLSRSAAPTPVSVY 29
           +H   +  P S+   S+PV + S AP PVS Y
Sbjct: 575 AHQNGYYAPVSASGISIPVDATSIAPVPVSYY 606


>04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204
          Length = 546

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +1

Query: 31  RPKLVLEPRTVKEPVNSLASTSQAS----SIFGGARPREERLKE 150
           RP+L L+P   ++P+ +    ++ +    S FG ARPREE L E
Sbjct: 258 RPRLNLDPPK-RDPLATATPPAEVARNRPSPFGAARPREEVLAE 300


>10_02_0061 - 4812903-4812940,4813140-4813536
          Length = 144

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 16  ADTSGRPKLVLEPRTVKEPVNSLASTSQASSIFG 117
           A  SGR  +VLE  TV     +LAS+S+ +S+ G
Sbjct: 98  AAMSGREAVVLERGTVMSCARTLASSSRDNSVGG 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,132,803
Number of Sequences: 37544
Number of extensions: 299346
Number of successful extensions: 796
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)