Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_K02
(546 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D26068-1|BAA05063.1| 230|Homo sapiens KIAA0038 protein. 46 7e-05
BC066928-1|AAH66928.1| 228|Homo sapiens eukaryotic translation ... 46 7e-05
BC021214-1|AAH21214.1| 228|Homo sapiens eukaryotic translation ... 46 7e-05
BC010021-1|AAH10021.1| 228|Homo sapiens eukaryotic translation ... 46 7e-05
AF045555-2|AAF75557.1| 228|Homo sapiens wbscr1 protein. 46 7e-05
AF045555-1|AAC04859.2| 248|Homo sapiens wbscr1 alternative spli... 46 7e-05
AC005081-5|AAS07403.1| 91|Homo sapiens unknown protein. 46 7e-05
X55733-1|CAA39265.1| 611|Homo sapiens initation factor 4B protein. 42 0.001
CR456958-1|CAG33239.1| 611|Homo sapiens EIF4B protein. 41 0.003
BC098437-1|AAH98437.1| 611|Homo sapiens eukaryotic translation ... 41 0.003
BC073154-1|AAH73154.1| 611|Homo sapiens eukaryotic translation ... 41 0.003
BC073139-1|AAH73139.1| 611|Homo sapiens eukaryotic translation ... 41 0.003
BC001097-1|AAH01097.1| 349|Homo sapiens EIF4B protein protein. 41 0.003
AK222528-1|BAD96248.1| 611|Homo sapiens eukaryotic translation ... 41 0.003
AB076839-1|BAB82380.1| 611|Homo sapiens eukaryotic initiation f... 41 0.003
AF026547-1|AAC80576.1| 1321|Homo sapiens neurocan protein. 32 1.1
AC003110-2|AAB86655.1| 990|Homo sapiens PGCN_HUMAN protein. 32 1.1
AB210004-1|BAE06086.1| 1335|Homo sapiens CSPG3 variant protein p... 32 1.1
>D26068-1|BAA05063.1| 230|Homo sapiens KIAA0038 protein.
Length = 230
Score = 46.4 bits (105), Expect = 7e-05
Identities = 22/36 (61%), Positives = 29/36 (80%)
Frame = +1
Query: 31 RPKLVLEPRTVKEPVNSLASTSQASSIFGGARPREE 138
RP+L L+PRTV P+N +A+ + S+IFGGARPREE
Sbjct: 190 RPRLQLKPRTVATPLNQVANPN--SAIFGGARPREE 223
>BC066928-1|AAH66928.1| 228|Homo sapiens eukaryotic translation
initiation factor 4H protein.
Length = 228
Score = 46.4 bits (105), Expect = 7e-05
Identities = 22/36 (61%), Positives = 29/36 (80%)
Frame = +1
Query: 31 RPKLVLEPRTVKEPVNSLASTSQASSIFGGARPREE 138
RP+L L+PRTV P+N +A+ + S+IFGGARPREE
Sbjct: 188 RPRLQLKPRTVATPLNQVANPN--SAIFGGARPREE 221
>BC021214-1|AAH21214.1| 228|Homo sapiens eukaryotic translation
initiation factor 4H protein.
Length = 228
Score = 46.4 bits (105), Expect = 7e-05
Identities = 22/36 (61%), Positives = 29/36 (80%)
Frame = +1
Query: 31 RPKLVLEPRTVKEPVNSLASTSQASSIFGGARPREE 138
RP+L L+PRTV P+N +A+ + S+IFGGARPREE
Sbjct: 188 RPRLQLKPRTVATPLNQVANPN--SAIFGGARPREE 221
>BC010021-1|AAH10021.1| 228|Homo sapiens eukaryotic translation
initiation factor 4H protein.
Length = 228
Score = 46.4 bits (105), Expect = 7e-05
Identities = 22/36 (61%), Positives = 29/36 (80%)
Frame = +1
Query: 31 RPKLVLEPRTVKEPVNSLASTSQASSIFGGARPREE 138
RP+L L+PRTV P+N +A+ + S+IFGGARPREE
Sbjct: 188 RPRLQLKPRTVATPLNQVANPN--SAIFGGARPREE 221
>AF045555-2|AAF75557.1| 228|Homo sapiens wbscr1 protein.
Length = 228
Score = 46.4 bits (105), Expect = 7e-05
Identities = 22/36 (61%), Positives = 29/36 (80%)
Frame = +1
Query: 31 RPKLVLEPRTVKEPVNSLASTSQASSIFGGARPREE 138
RP+L L+PRTV P+N +A+ + S+IFGGARPREE
Sbjct: 188 RPRLQLKPRTVATPLNQVANPN--SAIFGGARPREE 221
>AF045555-1|AAC04859.2| 248|Homo sapiens wbscr1 alternative spliced
product protein.
Length = 248
Score = 46.4 bits (105), Expect = 7e-05
Identities = 22/36 (61%), Positives = 29/36 (80%)
Frame = +1
Query: 31 RPKLVLEPRTVKEPVNSLASTSQASSIFGGARPREE 138
RP+L L+PRTV P+N +A+ + S+IFGGARPREE
Sbjct: 208 RPRLQLKPRTVATPLNQVANPN--SAIFGGARPREE 241
>AC005081-5|AAS07403.1| 91|Homo sapiens unknown protein.
Length = 91
Score = 46.4 bits (105), Expect = 7e-05
Identities = 22/36 (61%), Positives = 29/36 (80%)
Frame = +1
Query: 31 RPKLVLEPRTVKEPVNSLASTSQASSIFGGARPREE 138
RP+L L+PRTV P+N +A+ + S+IFGGARPREE
Sbjct: 51 RPRLQLKPRTVATPLNQVANPN--SAIFGGARPREE 84
>X55733-1|CAA39265.1| 611|Homo sapiens initation factor 4B protein.
Length = 611
Score = 42.3 bits (95), Expect = 0.001
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Frame = +1
Query: 31 RPKLVLEPRTVKEPVNSLASTSQ---ASSIFGGARPREERLKELSGE*TLKR 177
RPKL L+PR+ E +S ASTSQ A+SIFGGA+P + +E E L++
Sbjct: 331 RPKLNLKPRSTPEEDDSSASTSQSTRAASIFGGAKPVDTAAREREVEERLQK 382
>CR456958-1|CAG33239.1| 611|Homo sapiens EIF4B protein.
Length = 611
Score = 40.7 bits (91), Expect = 0.003
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Frame = +1
Query: 31 RPKLVLEPRTVKEPVNSLASTSQ---ASSIFGGARPREERLKELSGE*TLKR 177
RPKL L+PR+ + +S ASTSQ A+SIFGGA+P + +E E L++
Sbjct: 331 RPKLNLKPRSTPKEDDSSASTSQSTRAASIFGGAKPVDTAAREREVEERLQK 382
>BC098437-1|AAH98437.1| 611|Homo sapiens eukaryotic translation
initiation factor 4B protein.
Length = 611
Score = 40.7 bits (91), Expect = 0.003
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Frame = +1
Query: 31 RPKLVLEPRTVKEPVNSLASTSQ---ASSIFGGARPREERLKELSGE*TLKR 177
RPKL L+PR+ + +S ASTSQ A+SIFGGA+P + +E E L++
Sbjct: 331 RPKLNLKPRSTPKEDDSSASTSQSTRAASIFGGAKPVDTAAREREVEERLQK 382
>BC073154-1|AAH73154.1| 611|Homo sapiens eukaryotic translation
initiation factor 4B protein.
Length = 611
Score = 40.7 bits (91), Expect = 0.003
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Frame = +1
Query: 31 RPKLVLEPRTVKEPVNSLASTSQ---ASSIFGGARPREERLKELSGE*TLKR 177
RPKL L+PR+ + +S ASTSQ A+SIFGGA+P + +E E L++
Sbjct: 331 RPKLNLKPRSTPKEDDSSASTSQSTRAASIFGGAKPVDTAAREREVEERLQK 382
>BC073139-1|AAH73139.1| 611|Homo sapiens eukaryotic translation
initiation factor 4B protein.
Length = 611
Score = 40.7 bits (91), Expect = 0.003
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Frame = +1
Query: 31 RPKLVLEPRTVKEPVNSLASTSQ---ASSIFGGARPREERLKELSGE*TLKR 177
RPKL L+PR+ + +S ASTSQ A+SIFGGA+P + +E E L++
Sbjct: 331 RPKLNLKPRSTPKEDDSSASTSQSTRAASIFGGAKPVDTAAREREVEERLQK 382
>BC001097-1|AAH01097.1| 349|Homo sapiens EIF4B protein protein.
Length = 349
Score = 40.7 bits (91), Expect = 0.003
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Frame = +1
Query: 31 RPKLVLEPRTVKEPVNSLASTSQ---ASSIFGGARPREERLKELSGE*TLKR 177
RPKL L+PR+ + +S ASTSQ A+SIFGGA+P + +E E L++
Sbjct: 69 RPKLNLKPRSTPKEDDSSASTSQSTRAASIFGGAKPVDTAAREREVEERLQK 120
>AK222528-1|BAD96248.1| 611|Homo sapiens eukaryotic translation
initiation factor 4B variant protein.
Length = 611
Score = 40.7 bits (91), Expect = 0.003
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Frame = +1
Query: 31 RPKLVLEPRTVKEPVNSLASTSQ---ASSIFGGARPREERLKELSGE*TLKR 177
RPKL L+PR+ + +S ASTSQ A+SIFGGA+P + +E E L++
Sbjct: 331 RPKLNLKPRSTPKEDDSSASTSQSTRAASIFGGAKPVDTAAREREVEERLQK 382
>AB076839-1|BAB82380.1| 611|Homo sapiens eukaryotic initiation
factor 4B protein.
Length = 611
Score = 40.7 bits (91), Expect = 0.003
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Frame = +1
Query: 31 RPKLVLEPRTVKEPVNSLASTSQ---ASSIFGGARPREERLKELSGE*TLKR 177
RPKL L+PR+ + +S ASTSQ A+SIFGGA+P + +E E L++
Sbjct: 331 RPKLNLKPRSTPKEDDSSASTSQSTRAASIFGGAKPVDTAAREREVEERLQK 382
>AF026547-1|AAC80576.1| 1321|Homo sapiens neurocan protein.
Length = 1321
Score = 32.3 bits (70), Expect = 1.1
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = +3
Query: 336 PR-QWTRVQTHLTNSKNQPELSVKENVVR--KPWHGGRAFSNNP-RLSNYTL 479
PR +WT+V+T ++ P L K+NVVR K W G + + P R +N TL
Sbjct: 74 PRIKWTKVRTASGQRQDLPILVAKDNVVRVAKSWQGRVSLPSYPRRRANATL 125
>AC003110-2|AAB86655.1| 990|Homo sapiens PGCN_HUMAN protein.
Length = 990
Score = 32.3 bits (70), Expect = 1.1
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = +3
Query: 336 PR-QWTRVQTHLTNSKNQPELSVKENVVR--KPWHGGRAFSNNP-RLSNYTL 479
PR +WT+V+T ++ P L K+NVVR K W G + + P R +N TL
Sbjct: 74 PRIKWTKVRTASGQRQDLPILVAKDNVVRVAKSWQGRVSLPSYPRRRANATL 125
>AB210004-1|BAE06086.1| 1335|Homo sapiens CSPG3 variant protein
protein.
Length = 1335
Score = 32.3 bits (70), Expect = 1.1
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = +3
Query: 336 PR-QWTRVQTHLTNSKNQPELSVKENVVR--KPWHGGRAFSNNP-RLSNYTL 479
PR +WT+V+T ++ P L K+NVVR K W G + + P R +N TL
Sbjct: 88 PRIKWTKVRTASGQRQDLPILVAKDNVVRVAKSWQGRVSLPSYPRRRANATL 139
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,898,316
Number of Sequences: 237096
Number of extensions: 1641013
Number of successful extensions: 3392
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3377
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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