Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K02
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49207-9|CAA89068.2|  379|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF067222-2|AAC17018.2|  458|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z49207-9|CAA89068.2|  379|Caenorhabditis elegans Hypothetical
           protein R07E3.3 protein.
          Length = 379

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 458 PPE*LHSR-VRKPVAKYQVCSGSNT*EPV 541
           PP  +HS+ +  PV KY+V  GS T  PV
Sbjct: 141 PPPTMHSKQLNMPVCKYEVLDGSPTGPPV 169


>AF067222-2|AAC17018.2|  458|Caenorhabditis elegans Hypothetical
           protein H11E01.2 protein.
          Length = 458

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 542 ILVLKCCCRNTPGIWRQVFLLESVVTQAGIIRKC 441
           +LV   C  NT   WR VFL   ++  AG I  C
Sbjct: 391 LLVFLICTSNTLEEWRIVFLTHGILLIAGNIIFC 424


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,234,023
Number of Sequences: 27780
Number of extensions: 234608
Number of successful extensions: 542
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)