Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K02
         (546 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.38 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   6.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.2  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -2

Query: 404 FHRKFRLIFRVGQVGLNPRPLTRNPTAVQCPLRRHRFK 291
           FH K    F  G  G  P P+T  PT VQ  LRR + +
Sbjct: 142 FHEKLVESFPRG--GSLPTPVTPTPTTVQQLLRRAQIR 177


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 121 HHRIWMRPD 95
           H +IW+RPD
Sbjct: 224 HTKIWLRPD 232


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 491 VFLLESVVTQAGIIRKCPT 435
           +F L  VV  AGII + PT
Sbjct: 520 IFTLAVVVGTAGIILQAPT 538


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 519 PEHTWYLATGFLTRECSYSGGD 454
           P +  Y+   F TR+CS   G+
Sbjct: 82  PANRMYIEIKFTTRDCSLFPGN 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,498
Number of Sequences: 438
Number of extensions: 2999
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)