Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K01
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    28   0.60 
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb...    27   1.4  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    26   2.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   3.2  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    24   9.8  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    24   9.8  

>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1147

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +2

Query: 275  FIIFRKKCHTSESTLQQVFDSKIKSEETFTDITSYDDNKSL-SDIIKHEIKYEYSIDEPI 451
            F IF KK       L+ + D K+KSEE  +  T   +N+S+ SD IK E+    S  + +
Sbjct: 1030 FGIFEKKFTDYHKFLENISD-KLKSEEDTSLETPIHENQSIQSDQIK-EVGEVLSAIKSL 1087

Query: 452  SDS 460
            SDS
Sbjct: 1088 SDS 1090


>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 353

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = +2

Query: 257 LDMAQLFIIFRKKCHTSESTLQQVFDSKIKSEETFTDITSYDDNKSLSDIIKHEI 421
           +D+ + F+ F          ++ V+D KIK+E++   +  +  N S S  ++H+I
Sbjct: 100 VDVQKHFMHFNSSTREWHIVIEGVYDLKIKTEDSGFSLVDFGQNDS-SSRMEHKI 153


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 326 VFDSKIKSEETFTDITSYDDNKSLSDIIKHEIKYEYSIDE 445
           +F++ + S  T  +  +  D  S+SD + H+  Y Y+ DE
Sbjct: 491 LFENYVDSCVTTDEAFNVCDLLSISDCLSHDFPYSYTGDE 530


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 380  DDNKSLSDIIKHEIKYEYSIDEPISDS 460
            +DN  + D +KH +K+ +S  E I ++
Sbjct: 1070 NDNSKMGDAVKHVLKFMFSFLESIFEN 1096


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 326 VFDSKIKSEETFTDITSYDDNKSLSDIIKHEIKYEYSIDE 445
           V D +I   +   D+ S+D +   S+I+ H++  +  +DE
Sbjct: 325 VLDDRIAMHDWRLDLASFDIHGPDSNIMLHKVFDDVELDE 364


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 344 KSEETFTDITSYDDNKSLSDIIKHEIKYE 430
           K E     + S DDN S+ +I   ++KY+
Sbjct: 241 KDEADAESVLSSDDNDSIEEISIKKVKYD 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,542,063
Number of Sequences: 5004
Number of extensions: 26343
Number of successful extensions: 63
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)