Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K01
         (461 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0581 + 18986084-18986176,18986284-18986668,18986779-189868...    30   1.0  
03_06_0742 + 35900505-35900519,35901230-35901281,35901647-359017...    28   3.2  
05_02_0119 + 6793292-6793613,6795793-6795952,6796416-6796458,679...    27   5.6  

>08_02_0581 +
           18986084-18986176,18986284-18986668,18986779-18986861,
           18986966-18987110,18987823-18987951,18988047-18988171,
           18988261-18988419,18988503-18988665,18988750-18988875,
           18989110-18989471,18989572-18989772,18989873-18989982,
           18990079-18990163,18990298-18990426,18990505-18990610,
           18990688-18990776,18990885-18991184
          Length = 929

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 233 PQFSCG-SCLDMAQLFIIFRKKCHTSESTLQQVFDSKIKS 349
           P++ CG +C+D A      R +C    STL QV    IKS
Sbjct: 66  PKYQCGCACVDAAPDGTCRRTECGVEHSTLDQVGSCPIKS 105


>03_06_0742 +
           35900505-35900519,35901230-35901281,35901647-35901772,
           35902303-35902613,35902745-35902988,35903726-35903976,
           35904071-35904277,35904546-35904713,35904798-35905127,
           35905266-35905400
          Length = 612

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +2

Query: 323 QVFDSKIKSEETFTDITSYDDNKSLSD-IIKHEIK--YEY-SIDEP 448
           +V+  K  SEE F  +  Y D    SD    HE+K  YEY S+ EP
Sbjct: 168 EVWVYKKTSEEKFPTLKKYSDKAPASDKFASHEVKVDYEYKSVLEP 213


>05_02_0119 +
           6793292-6793613,6795793-6795952,6796416-6796458,
           6797015-6797335
          Length = 281

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 234 GRPSNIAIFKLTSKL*FTINVSSN-GIKGFSDDKHALHISI 115
           G P + A+F+LT+K  + ++V      KGF   K +  +S+
Sbjct: 136 GTPGSAAVFELTAKFCYGVSVDGGVRTKGFRIQKQSYRLSL 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,046,162
Number of Sequences: 37544
Number of extensions: 142775
Number of successful extensions: 247
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)