Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K01
         (461 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    30   0.70 
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    30   0.70 
U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helical...    28   3.7  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    28   3.7  
Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical pr...    27   4.9  
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related...    27   4.9  
AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +2

Query: 311 STLQQVFDSKIKSEETFTDITSYDDNKSLSDIIKHEIKYEY 433
           +T   VFDS  KSE+   +  SY  N +LS ++    KYEY
Sbjct: 96  NTSGDVFDSD-KSEDGLMNDESYLSNTTLSQVVLDSQKYEY 135


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +2

Query: 311 STLQQVFDSKIKSEETFTDITSYDDNKSLSDIIKHEIKYEY 433
           +T   VFDS  KSE+   +  SY  N +LS ++    KYEY
Sbjct: 96  NTSGDVFDSD-KSEDGLMNDESYLSNTTLSQVVLDSQKYEY 135


>U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform c
            protein.
          Length = 1310

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 290  KKCHTSESTLQQVFDSKIKSEETFTDITSYDDNKSL 397
            K+C TS+ST +  F + +K  ETF D     D+K +
Sbjct: 1041 KQCLTSDSTKRANFATILKIFETFRDDQKCQDDKPI 1076


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform a
            protein.
          Length = 2456

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 290  KKCHTSESTLQQVFDSKIKSEETFTDITSYDDNKSL 397
            K+C TS+ST +  F + +K  ETF D     D+K +
Sbjct: 2187 KQCLTSDSTKRANFATILKIFETFRDDQKCQDDKPI 2222


>Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical
           protein F36G3.1 protein.
          Length = 964

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 308 ESTLQQVFDSKIKSEETFTDITSYDDNKSLSDIIKHEIKYEY 433
           E+   ++  + I S+E  T  T+ D+N   SD   H++K ++
Sbjct: 470 EAVQNELMPTHIISDEVETSSTTADNNIPFSDCSTHKVKVDF 511


>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
            see also lmb-protein 2 protein.
          Length = 1535

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/55 (21%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 245  CGSCLDMAQLFI-IFRKKCHTSESTLQQVFDSKIKSEETFTDITSYDDNKSLSDI 406
            C  C  + Q  + +FR+K  + ++TLQ++ ++     +T  D    + +++ S++
Sbjct: 1026 CDDCYTLIQSRVNVFREKVKSLDNTLQEIIENPAPVNDTKFDEKVKETSRAASEV 1080


>AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical
           protein C48E7.6 protein.
          Length = 1764

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 365 DITSYDDNKSLSDIIKHEIKYEYSIDEPISD 457
           ++   D N +  DI KH + Y +S DE  +D
Sbjct: 499 EVLKKDSNFTSDDIAKHRLTYSHSGDETRTD 529


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,646,014
Number of Sequences: 27780
Number of extensions: 152019
Number of successful extensions: 435
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)