Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_J24
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    28   1.1  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    25   5.6  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   7.4  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.4  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   9.8  

>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 50  IIIGFSKNNTRTYERDDIERIRASATGHGFTKL*HNWYIIFSE 178
           +++ F K +  TY R  + R    +  H F ++   WY I  E
Sbjct: 577 LLLAFLKPSLMTYVRSTVARSMELSIRHAFEQVDREWYEIHKE 619


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 493 RSINTYLPKTFCSILIHNIYMAP 425
           R+IN++ P+T+C   I+  YM P
Sbjct: 143 RTINSFNPRTYCESRIYE-YMVP 164


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = -1

Query: 201 YYLKFVTVSEKIIYQLC*SFVKPCPV----AEARIRSISSLSYVRVL 73
           Y L FV  S   IY+L  SFV    V    +E ++R+   L  VR+L
Sbjct: 465 YLLNFVKTSFAQIYELVCSFVNNVAVMESSSEKQLRTSRCLKIVRLL 511


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 379 YSNSIN*TFVKFNFFYFKVTYYITY 305
           +SNS+  T     F+YF  +YY+ Y
Sbjct: 135 FSNSLETTLTSIGFYYF--SYYLKY 157


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 214 YSQYLLSKIRNSFGKNNIPVVLEFRKAV 131
           YS+ L SK+R++   NN+ V L    A+
Sbjct: 799 YSRILSSKVRDNLQNNNLHVYLTRHPAI 826


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,106,918
Number of Sequences: 5004
Number of extensions: 41360
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)