Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_J24
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949...    30   1.1  
01_06_0785 - 31985455-31988463                                         28   5.7  
05_01_0296 - 2303344-2303395,2303732-2304180,2304287-2304355,230...    27   7.5  
02_04_0199 - 20861793-20862023,20862588-20862798,20863260-208641...    27   10.0 
02_02_0402 - 9852407-9853519                                           27   10.0 

>04_04_1237 -
           31991817-31992569,31993452-31993550,31994343-31994976,
           31995329-31995585
          Length = 580

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 379 YSNSIN*TFVKFNFFYFKVTYYITYHKYFVV*IFS 275
           ++ +IN   VKF FF F+V +Y+ Y   +V  +FS
Sbjct: 294 HAPAINEWMVKFLFFVFEVEHYLEYLTPYVADVFS 328


>01_06_0785 - 31985455-31988463
          Length = 1002

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 241 IILEQLKSYYSQYLLSKIRNSFGKNN-IPVVLEFRKA 134
           +++   KS+ + Y + ++RN FGK N IP+  +   A
Sbjct: 230 VVILTRKSFGNPYTIEELRNFFGKKNLIPIFFDLGAA 266


>05_01_0296 -
           2303344-2303395,2303732-2304180,2304287-2304355,
           2304539-2306546,2311181-2311425
          Length = 940

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 114 ALRPLGTALRNSNTTGILFFPKLLRILDNKYCE*YDFNCSKIIQT*NAITFRDREN 281
           A     TAL+++N T   F  KL +IL+       DF C + + T   IT+   EN
Sbjct: 803 ATSDFSTALKDANLTVHTFIKKLKKILEVYRSPSTDFPCIR-VSTLELITWMVEEN 857


>02_04_0199 -
           20861793-20862023,20862588-20862798,20863260-20864142,
           20864363-20865608
          Length = 856

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 190 IRNSFGKNNIPVVLEFRKAVPSGRSANSFDIVSFVCSRVIFTKSY 56
           +      NNI + LEFR  +     A   D+ +  C+++  TK Y
Sbjct: 368 VHRDITSNNILLDLEFRACISDFGIAKILDVEASNCTKLAGTKGY 412


>02_02_0402 - 9852407-9853519
          Length = 370

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 65  SKNNTRTYERDDIERIRASATGHGFT 142
           S++ TR ++RDD E +R     HG T
Sbjct: 9   SRSGTRRHQRDDDEEMRGGQRRHGET 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,532,191
Number of Sequences: 37544
Number of extensions: 193646
Number of successful extensions: 405
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)